Oncorhynchus keta (chum salmon): 118388175
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Entry
118388175 CDS
T09424
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118388175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Pur_ac_phosph_N
DUF4992
VWA_3
fn3_2
zf-DPOE
Motif
Other DBs
NCBI-GeneID:
118388175
NCBI-ProteinID:
XP_052382896
LinkDB
All DBs
Position
10:complement(35554926..35646449)
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AA seq
3003 aa
AA seq
DB search
MKMWCWVFPLAFLLSSVHQAEAQGRCNNVGPADIVFLIDGSSSIGRANFLQVKGFMAGII
KPFTSSVGQSGIRFGAVQYSDTSRVEFTFTTYLNGTELVSAVENLNYKGGNTRTGAGLKF
VADNFFNPTSIRNVSKVCILITDGKSQDSVSDTAQKLRSLGVEMFAVGIKSADQTELALI
ATPPQRDYTFFVGDFKLLNTLLSLVGPRVCSSSGGVYASDDAFSGPSNLQFSSQTSDSLR
FRWTPAGGPVTGYVVQYTPLSGLGQPITAELRQETVSAFQRSFVARELKSGTDYLVTVIG
QYPNSVGEPVSAKARTNSLPGVSGLRLVQAGFFSLSLTWDAPTSQFQGYRLTYGPRGQPK
AQLLEQSLAADSTSVTLERLLPDTEYVLTLYPLFPRNSASPATLTSRTLRLEAAQQLSVD
TVSERSVRVLWRGVGGARAYRLVWGPFTGRDVESVEVAGDSETHTLLNLQPDTEYIVTVI
ALYEGNTEGPGATTRFKIERLEQQVLRAATTGPSSIRLTWNYIQSARGYRLEWRQGEGGR
MQSQSFSRNTTIYDLSGLQPSTEYVITLFTLYEGREEATPVSTSPTVEQPVGRVSNLRVV
EYLGSTVRLGWTGVAGATQYRILMVNTEAQTEETRSIPGSQTTLDLRGLTEGVSYGVSVT
AVVGDSEGDPVTVYIKSEQALERVTNLRVTNTNGRRLRIAWTGVSGATGYRVTWRQGNNA
EQSRVLGPEASSYTVEGLQPDTAVVLGVAAVIGQRIGEVVTLSARTNGNNGSSTVSGLRI
IDVTSQRIRITWSPVSRATGYKITWRSGNGVESSRTVAADVTSFTIDSLQEDSSYRVSVS
SLIGSREGYPTSLNTRTESDQLVVGTVTSLKAQESRGEVVRVTWVGVQGATAYRVAWKRI
DGGEERSQLVGGDLTAVDLEQLDPGAQYEVQVMALVQNREGSPVSVRVTTPGEPVAVDRV
EGVRVLEATPRVLRLVWRGMAGVTGYRIYWRSALGEAESSRLIRRDATSFDLDGLRPGVS
YTVRLAAIFRDRESQAVTITASTAPLQPVTGLRVAEVTQNSVLLGWVPLTGATGYILRWK
EERDTGPGQSTTLPGSSSSYRVTGLRLGLRYRFTLQPNFQREVGPETSVDERTVCVGGRL
DVVFLVPASRDRASLADSLLSLLTSAAGSLTTIGERDSQLGIVVYGARPKVWFLLNRHSN
SETLLQEILSTPFEDGPGNAIGQAMTFTRQFLLSPTAGRRPRVPGAVVIIADEKSSDNIT
VPASVVKASGVTVLAVGIGRADSEELRQAVTDGSTQNLLYARDATQLGTLHADLADLLCG
VARIPEGVGPVTEQCTVQCPRGDRGERGGKGESGRDGADGRKGEPGRDGLPGREGPRGPE
GRQGQPGRSEDPSVGVRGEKGERGFPGLDGNPGLPGRPGTPGPGGVPGSQGLPGVRGDPG
DPGVTGTPGTKGDRGDRGEPGSAVSGGGLPGRKGEPGIPGIPGTLGRPGNDGAKGFVGPA
GTPGQDGRPGIPGTPGLSIKGDKGSTGERGPPGVGSGLAVKGEKGSLGSNGNPGAQGLRG
STGQQGAKGDKGESAEGLPGLPGKAGEPGDRGPRGPAGSIGLKGDRGQPGEPGSQGDRGE
RGLAGLAAERGESGQPGSTGAPGLRGLPGTSGLPGEKGSDGAKGEPGRSGPGLGGKKGEQ
GEPGLPGPEGPRGQKGDPAQKGEKGSPGTGSPGQAGSKGEQGDRGLSGLAGRLGIKGDSG
EPGERGETGRAGPAGKNGVPGKEGAKGDKGDEGTPGESGLPGKAGERGLRGLAGQPGRAG
EKGDLGDPGEHGRNGSPGPIGPRGEKGVEGAQGRPGPPGKVGDTEQKLKGERGEKGDAGD
PGEHGGKGQKGEAGSSGAAGLRGLEGQRGPPGSRGDTGERGGPGEKGERGASGLDGRNGL
DGKPGAPGAAGLRGDPGKLGDPGRDGLPGLRGVQGLPGPIGPAGNPGTPGKAGEDGKPGA
AGKMGEDGVPGEDGRKGDKGEAGVSGRDGRDGLKGDRGLGGPAGPTGLSGPQGVPGTIGP
PGQVVYAKGAPTPSIPGPQGPPGSTGVPGIPGTAGARGERGAVGSKGERGDPGEDGQPGR
PGTAVDVQKALSNLGIEMQDLKVLVDNRNVPGKSVLEKAEKGQRGDKGEAGQRGPAGIDG
ARGLSGERGVKGEQGERGPVGATGPTGRAIGEKGPVGPTGQAGEPGKPGIPGVPGRAGEL
GEAGRPGDKGERGEKGDKGEAGKNGLGGSVGPPGPKGAAAVAGESGLPGARGLPGVTGPK
GEPGASGPQGSKGDRGIAGLRGDKGDRGPSGEQGRDGFQGTAGEPGKPGQDGKPQGPQGP
AGPQGRSGNPGEPGIRGPTGPIGTNGPPGPSGVKGNQGVPGVGVQGLPGPEGNMGVRGPA
GPPGAVGPSGPPGLPGQTGEGGKPGVPGRDGIPGKEGTPGLPGKQGIAGPMGSAGLKGEQ
GDSGPPGKAVAGPPGMKGAQGPPGVTLPGTVGESGLPGLRGERGDKGPAGIKGDRGAAGE
NGEPGEDGGRGPAGPKGDRGERGIGLAGPPGQLGPQGLNGDTGLPGPAGPPGAQGVAGTP
GLAGLRGENGTPGPPGPLGPRGIQGFTGQTGTPGAPGPPGPPGLAGSPGTAGGKGDKGAI
GAGVPGLRGERGDPGPRGEEGRGGQNGERGLAGSPGGKGGRGDKGELGLQGGKGEKGDTL
LVGGPPGEKGNKGETGDRGPKGVQGEKGLKGNDGPAGEQGLRGEPGDRGSTGFQGARGPG
GQKGEAGQPGVPGESGTPGKDGMPGFRGDKGDVGITGMRGIKGDRGSKGACGSDGPKGEK
GDSGIHGRSGLPGRKGEQGDLGPPGAIGTPGKEGLIGPKGDRGIDGVLGPKGTQGEKGER
GPSGIPGPPGPTGVDGASGLTGPQGPAGAKGPEGLQGQKGERGPIGPAKIGPRGIPGIPG
ERGGQGELGLDGAKGDRGEPGLTEDEIRAYVRTEMSQHCACGGEWAQSDMWTRWFKCSSS
SSL
NT seq
9012 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgtggtgctgggttttccccctggcgttcctgctgtcctcagtgcaccaggct
gaagcccaaggcaggtgtaataatgttggaccagcagacatagtgttcctgatagatggc
tcgtccagtatcggcagggccaacttcctgcaggtcaagggcttcatggccggtatcatc
aagcccttcaccagctccgtgggccaatcagggatccgcttcggcgctgtgcagtacagc
gacacctcaagagtggagttcaccttcaccacatacctgaatggcacagagctggtcagc
gctgtggagaacctcaactataagggaggcaacactcgcaccggtgctggcctcaaattt
gtcgctgacaacttcttcaaccccacctccatccggaacgtctcaaaggtctgtatactg
atcacagatgggaagtctcaagacagtgtaagcgacacagctcagaagctacggagtctg
ggagtggagatgtttgcagtgggtataaagagtgcagaccagactgagttggctctgata
gccactcctcctcagagagactacacattctttgtgggggactttaagttgcttaacaca
ctgctctccctggtgggcccgcgtgtttgttccagctctggtggagtgtacgctagcgat
gatgccttctccggtccctctaacctccagttctcaagccagacctctgattcgctcagg
ttccggtggactcccgcaggggggcctgtaactggctatgtggtgcagtacacgcccctc
tctggccttggccagccaatcacagcggagctgcgtcaggagacggtgtctgcatttcag
aggagcttcgtggctagagagctgaagtcagggacagactacttggtgacggtcatcggc
cagtatcccaacagtgtgggagagcctgtgtccgccaaggcaagaaccaactcgctaccg
ggggtgtccggtcttcgtctggtccaggctggtttcttctccctctcgctgacctgggac
gctcccacctcacagttccagggctaccgactcacctatggtccccgaggtcagcccaag
gcccagctattggagcagtctctggctgcagactctacttctgtcaccctggagaggcta
ctgcccgacacagagtacgtcctcaccctctacccgctgttcccccgaaactctgcctcc
cccgccaccctcacctcccggacattgcgtctagaagcggcccagcagctgtcagtggat
actgtgtcagagcgtagtgtccgggtgttgtggagaggagtgggtggagccagggcctac
agactggtctggggaccattcaccggtcgtgatgtggaatctgtggaggtggctggtgac
agtgagactcacaccctgttgaacctgcagccagacactgagtacattgtcactgtcatc
gctctctacgaaggcaacacagagggtcctggtgctaccaccaggttcaagatagagcgt
ctggagcagcaggtgctgagggcagccaccaccgggccctcctccatccgcctcacctgg
aactacatccagtctgccaggggataccgcctggagtggaggcagggggaaggtggcaga
atgcagagtcagtcattctccaggaacaccactatttatgatctgtcagggctgcagccc
agcactgagtatgtcatcaccttgttcaccctgtatgagggacgagaagaggccaccccc
gtctccacctctcccacagtggaacagccggtggggagggtgtccaacctgcgagtggta
gagtacctgggcagcactgtgcgactgggatggacaggggtagccggggcaacgcagtac
cgtatcctcatggtcaacactgaagcgcaaacagaggaaacccgcagtatccctggaagc
cagacgacccttgaccttaggggtctgacagagggcgtgtcttatggggtcagcgtgaca
gctgtggtgggagacagcgagggggacccagtcactgtctacatcaaatcagaacaagca
ttggagagagtgacaaacctgcgtgtgacaaacaccaatggtcggcgactccgaatcgcc
tggacaggggtttccggggcgacagggtacagggtcacttggagacaaggcaacaatgcg
gagcagtcccgtgttctggggccagaggcctcgtcctacacggtggaggggctgcagcca
gacacagctgtggtcctgggcgtggcggctgtgattggtcaacgtatcggggaggtggtc
accctctcggccaggaccaatggcaacaacggctcaagcacggttagcggcctgcgtatc
attgatgtcacctctcagaggatacgcatcacatggtcaccagtctccagggcaactggc
tacaagattacctggcgcagtggaaatggagtggagtcctcccgcacggtggccgctgat
gtcacttccttcaccatcgacagccttcaggaagactcctcctaccgggtctcagtctcc
tcactgattgggtctcgggaaggataccccacctccctgaacaccagaacagagtcagac
cagttggtggtgggaacagtgacttcactcaaagcccaagagtcccgcggtgaggtcgtc
agagtaacatgggtgggcgtgcagggagcgacagcctatcgtgtggcttggaagcgaatt
gacggtggggaggagaggagccagctggtaggtggtgacctcacagcggtggacctggag
cagctggacccaggggctcagtatgaggtgcaggtcatggccctggttcagaacagagag
ggatcccccgtctctgtcagagtcacaacacctggggaacctgttgctgtggaccgtgtg
gagggggtcagggtgctggaggctaccccaagggtgctgcgtctggtctggagaggaatg
gctggggtcacagggtaccgcatctactggagatcagccctgggtgaggctgaatcgagc
cgtctgatacgtcgagatgcgacctcgtttgacctggatggtctgcggcctggggtgagc
tacacagtaaggctggctgccatcttcagggacagagagagtcaagctgtcactatcaca
gcctccacagctcccctacagcctgtaacaggtctgcgtgtggcagaggttacccagaat
tctgtgttgttaggctgggttccactgactggtgccacaggatatatcctgcgctggaaa
gaggagagagatactggtccgggtcaatccaccacgctgcctgggtcatccagctcctac
agggtgacagggctacgtctgggcctgagataccgcttcaccctgcagcccaacttccag
agggaggtgggccctgagacctcagtggacgaacgcactgtgtgtgtgggtggtcgtctc
gacgtggtattcctggttccagcttccagggaccgggccagcctggctgattctctgctc
tccctcctgaccagcgctgctggctccctcaccaccattggagaacgggactcacagctg
gggattgtagtgtacggcgcccgacccaaggtctggttcctgctaaatcgccatagcaac
agtgagacgctgcttcaggagatcctgtccacgccttttgaggatggcccagggaatgct
ataggccaggcaatgactttcaccagacagttccttctcagccccacagctggtcgtaga
cccagagtccctggtgcggtggtgatcattgcagatgaaaaatcctccgacaacatcact
gtcccagccagtgttgtcaaagcatcaggagtgacggtgctggcggtgggtataggtagg
gcggactctgaggagctgcgccaggcagtgacagatggcagcacccagaaccttctatat
gcccgtgatgccacccagctgggcaccctgcacgccgacctggctgacctgctgtgtggc
gtcgccaggataccagagggagtggggccagtgacagagcagtgtaccgtacagtgtcct
cggggtgaccggggggagcgaggaggaaagggagagagtggaagagacggtgctgacgga
cgcaaaggagagcctggtcgtgatggtttgcctggcagggagggccccagagggcctgag
gggcgacagggtcagcctggccgaagtgaggacccctcagtgggggtcagaggggagaag
ggggagaggggttttcctggtctggatgggaatccagggttgccagggcgaccagggacc
ccaggccctggaggtgtcccgggttcacaggggctaccgggtgtcagaggagatcctggt
gatcctggggttacaggaacaccagggacaaagggtgacaggggcgacaggggggagcca
gggtcagctgtttcaggaggaggtctgcccgggaggaaaggggaaccagggatcccagga
ataccaggtaccctagggcgtccagggaatgacggggccaagggctttgtgggacctgca
gggacccctggacaggatggtcgcccagggataccaggcacccccggcctctccattaag
ggagacaagggcagcaccggagagaggggacctccaggagtgggcagtggcttggctgtg
aagggggagaagggatcactggggtctaatggaaacccaggagctcagggtctcagagga
tctacaggacaacaaggagccaaaggagacaagggggagagtgcagaggggttgccagga
ctgcctgggaaggcaggagagcctggtgatcggggtccccgtgggcctgctgggagcatt
ggactcaagggggaccggggccagccaggtgaacctggatcacaaggtgacaggggggag
agaggacttgctggcttggcagcggagaggggggagagtggacagccaggctctacaggg
gctcctggcctgaggggtttgcctggcaccagtggattaccaggagagaagggcagtgac
ggcgcaaaaggagaacctggccggagtgggccaggattaggtgggaagaaaggtgaacag
ggtgaaccgggtctgccaggtccagaggggcccaggggccagaagggcgatccagcccag
aaaggtgaaaaaggttccccaggtactggctctcctggccaggctggatctaaaggagag
cagggggatcggggactctctggcttagctggaagactggggatcaagggagattcaggt
gaaccaggagagagaggggagacaggacgagccggacccgcaggaaagaatggcgtccca
gggaaagagggagccaaaggagacaagggtgacgaaggcactcccggggagtctggactc
ccagggaaggcaggggagagaggactaaggggccttgcgggtcagcctggacgagcagga
gagaagggagacctgggagaccctggagagcatggacgtaatggcagcccaggacctatc
ggaccaagaggagagaaaggagttgagggagctcaaggccgcccaggacctccagggaag
gtgggcgatacagagcaaaagcttaaaggagaaagaggagaaaagggagatgctggtgac
ccgggagagcatgggggcaaaggtcagaagggcgaggcagggtcctcaggggctgcgggg
ctccggggtctcgagggacagcgtggacctccagggtcgagaggtgacacaggagaaaga
ggaggcccaggagagaagggagagagaggtgcgtctgggctggatggacgcaacggtctg
gatggcaaaccaggggcaccaggagcggccggcctgaggggagacccaggcaaactaggg
gatccaggaagagatgggctgccaggactaagaggtgtacagggcctcccaggccctatt
gggcccgctggaaatccaggcacacctggcaaagcaggagaagatggaaaaccaggggct
gctgggaaaatgggtgaggatggcgtaccaggggaagatggcagaaagggtgacaaagga
gaggctggggtttctggaagagacggccgtgatgggctgaagggggaccggggccttggc
gggcctgcagggccaactggtctatctgggccccaaggggtccctggcaccatcggacct
ccaggacaggtggtctatgcgaagggagctccaacaccatctatccctggccctcagggg
cctccaggaagcacaggtgtgcctggaatcccagggaccgcaggagctagaggggagaga
ggagcagtgggcagtaaaggtgaaaggggtgacccaggagaggacgggcaaccgggcagg
cctggaacagcagtggatgtgcagaaggccctctctaaccttggcattgagatgcaggac
ctgaaggtgcttgtggataacaggaatgtgccaggcaagagtgtgctggagaaggctgag
aagggccagagaggagacaagggagaggccgggcagagaggaccagcagggatagatggt
gcccgcgggctgtctggggagaggggtgtgaagggagagcagggggaacggggtcctgta
ggggccacaggacccacagggagggccattggagagaagggcccagtaggacccacggga
caggctggagagccaggaaaacctggaatacctggagtaccagggagagctggagaactg
ggagaggctggacgacctggagataagggggagagaggagagaagggtgacaaaggagag
gctgggaaaaacgggctaggtggctcagtgggccctcctggaccaaagggtgctgctgca
gtagcgggtgaatctggactccccggagcaaggggcctccctggggtcacagggccgaag
ggagagcctggcgcctcagggccacagggatccaaaggcgacaggggtattgcagggctc
cgtggagataaaggtgatcggggtccatctggagaacagggacgcgatggttttcagggg
acagcaggagaacctggcaaaccgggacaggatgggaagccgcagggtccacaagggcca
gctggtcctcaaggccgctcaggaaaccctggagaacctggaattagagggccaactggt
ccgatcggtaccaatggacctccaggtccgtcaggggtaaagggtaatcaaggagtgcct
ggggttggtgttcagggacttcctggtcccgaaggcaacatgggagtgcgtggacctgca
gggcctcctggagctgtgggtccatctgggcctccgggtctaccagggcagacaggggag
gggggcaagccaggggtcccaggaagagacgggatacctggaaaagagggaacaccaggg
ttgccagggaaacagggtatcgctggaccaatggggtccgcggggttgaagggggagcag
ggggacagtggccccccaggaaaggctgtagcaggaccccctggtatgaaaggagcacag
ggacctcctggtgtgaccttacctgggacagtgggagagagcgggctgccagggctacgg
ggtgagaggggagacaagggtcctgcaggcatcaaaggggaccggggagctgctggtgaa
aatggggagcctggagaagatgggggcagaggaccagcagggcctaaaggagacagggga
gagagaggcatcggactggcagggcctcctggtcagctgggacctcaagggttaaatggg
gacacaggtctcccgggcccagcaggccctccaggagcccagggtgtagcagggacccct
ggtctggccggcctgagaggagagaacggaactccaggacccccaggacctctaggaccc
aggggtatccaaggctttactggtcagacagggactcctggagctcctgggccacccgga
ccccctggcttagctggttcaccgggcactgctggaggcaaaggggataagggagcgatt
ggagcgggagtacctggattgagaggcgagagaggagacccaggacccaggggggaggag
ggtcgaggtggtcagaacggggagagaggactagcgggctctccaggtggcaaaggaggc
aggggagataagggtgaattggggctgcaaggtggcaaaggagaaaagggtgatactctc
ctggtgggaggacctccaggagagaaaggaaataaaggagagacgggtgaccgagggccc
aaaggggtgcagggggagaaaggcttgaaaggcaatgacggcccagctggggagcagggt
ctgaggggtgagccaggagacaggggctctacagggttccagggagccagaggtccagga
ggacagaagggagaggcgggacagcctggtgtacctggagaatcaggtaccccaggaaag
gatggaatgccaggctttagaggggataagggagacgttggaataactggaatgcgtgga
attaagggcgaccgaggatcaaagggggcttgtggatcagacggaccgaaaggagaaaag
ggagattcagggatccatgggaggtcagggttgcctggaaggaaaggtgaacagggagac
ttggggcctccaggggccattggaacccctggcaaggagggactgatcggccccaagggt
gaccgaggcattgatggagtactaggacccaaaggaacgcagggagagaagggcgaaagg
ggcccctcgggtatccctggccctccgggccccacaggagtggacggggcctctggactg
acagggcctcaggggcccgctggagctaagggcccagaagggctccaaggacagaagggg
gagagggggcctattggtcctgccaagattggtccacgtggtatcccaggtataccagga
gaaagaggcgggcagggggagttgggcctagatggagccaagggagacagaggagagcca
ggcttgacggaggatgagattcgtgcatacgtccgcacagagatgagccaacactgtgct
tgtggaggtgagtgggctcagtctgacatgtggactaggtggtttaagtgcagtagcagt
agttcgctttga
DBGET
integrated database retrieval system
