Oncorhynchus keta (chum salmon): 118388310
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Entry
118388310 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-4-like
KO
K04659
thrombospondin 2/3/4/5
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04145
Phagosome
oke04510
Focal adhesion
oke04512
ECM-receptor interaction
oke04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118388310
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
118388310
09144 Cellular community - eukaryotes
04510 Focal adhesion
118388310
09142 Cell motility
04820 Cytoskeleton in muscle cells
118388310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118388310
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oke04147
]
118388310
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118388310
Membrane trafficking [BR:
oke04131
]
Endocytosis
Phagocytosis
Opsonins
118388310
Exosome [BR:
oke04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118388310
Exosomal proteins of colorectal cancer cells
118388310
Exosomal proteins of bladder cancer cells
118388310
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118388310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_3
Motif
Other DBs
NCBI-GeneID:
118388310
NCBI-ProteinID:
XP_035633116
LinkDB
All DBs
Position
1:complement(55543606..55568126)
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AA seq
653 aa
AA seq
DB search
MGVRCINTSPGFRCGPCPTGYTGPRVQGIGLSYATNNKQVCKDINEYEGPKNGGCMENSN
CVNTPAGYVGDQRKGCKPERACGNGQLNPCHASRECIVQRDGKIECQCGVGWAGNGYFCS
SDMDIDGFPDEKLECTERNCAKDNCRTVSNSGQEDVDKDGKGDACDEDADGDGILNTQDN
CVLVPNVNQRNVDEDYFGDACDNCRVIKNNDQKDTDVDRLGDECDEDIDGDRIPNNLDNC
KRVPNANQKDRDGDKVRDACDSCPYVQNPDQLDMDNDLIGAPCDTNKDSDGDGHQDSXDN
CPAVINSSQLDTDKDGLGDECDDDDDDDGIPDLLPPGPDNCRLIPNPLQEDSDAESSFHK
VLQYIRVMLTVILSSDLKVTYCVNLLVTGDGVGNVCENDFDNDTIIDSIDVCPENAEVNL
TDFRAYQTVVLDPEGDAQIDPNWVVLDQGREMVQTMNSDPGLAVGYTAFNGVDFEGTFHV
NTVTDDDYAGFIFGYQDSSSFYVVMWKQVEQIYWQANPFRAVAEPGIQLKAVKSNTGPGE
NLRNSLWHTGDSSYLVKLLWKDVRNVGWKDKTSYRWFLQHRPQDGYIRVRFFEGPQIVAD
TGIIIDITMRGGRLGVFYFSQENIIWANLRYRCNDTTHEDFDSYQVQPVQLQF
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgcgctgcatcaacacctctccagggttccgctgtggcccctgtcccactggc
tacaccggcccccgggtgcagggaataggcctctcctacgccactaacaacaaacaggtc
tgtaaggacatcaatgagtacgaaggacccaagaatggaggttgtatggaaaattccaac
tgtgtgaacacacctgcaggctatgtgggggatcagcgcaagggctgtaagcctgagaga
gcgtgtggtaatggccagctcaacccctgccatgccagcagagagtgcattgtccaacga
gatgggaaaatagagtgtcagtgtggcgtgggatgggctggcaatggctacttctgcagc
tctgacatggacattgatggcttccctgatgagaaactggaatgcaccgagaggaactgt
gccaaggataactgtcgaacagtatccaactctggccaagaggatgtagacaaggatggc
aaaggagatgcctgtgatgaggatgcagatggggatggaatcctaaatacacaggacaac
tgtgtgctggtaccaaatgtcaaccaaagaaatgtggacgaagactactttggagacgcc
tgtgacaactgccgtgtgatcaaaaacaacgaccagaaagacactgatgtcgatagactg
ggtgacgaatgtgacgaagacattgatggcgacagaatccccaataatctggacaactgc
aaaagggttcccaatgctaaccagaaggatcgagatggggacaaagtcagagatgcttgt
gacagttgcccctatgttcaaaaccctgaccagttggatatggacaacgatttgatcgga
gccccttgtgacaccaataaggacagtgatggtgacggtcaccaggactcannggacaac
tgccctgcagtcatcaacagctcccagctggacacggacaaggacggcctgggggacgag
tgtgacgatgacgatgatgatgatggtattcctgaccttctccccccgggaccggacaac
tgtcgcctcattcccaaccctctgcaggaggactctgacgctgagtctagtttccacaaa
gttctccaatatatccgtgtaatgttgacagtaatattgtccagtgacttaaaagtcaca
tattgcgtcaatctccttgttacaggtgatggtgttgggaatgtgtgtgagaacgacttt
gacaacgacaccatcatcgacagcatcgatgtgtgcccggagaacgccgaggtcaatctc
acagacttcagggcctaccagacagtggtgctggacccagagggagacgcacagatagac
cctaactgggtggtgctcgatcagggaagagagatggtccaaactatgaacagtgaccct
ggactggctgttggttacacagctttcaacggtgttgacttcgaagggactttccatgtg
aataccgtcacggacgacgactatgcagggttcatctttggctaccaggactcttcctcc
ttctacgtggtgatgtggaaacaggttgagcaaatctattggcaggccaatccattcaga
gctgtggcagaaccagggatccaactgaaggctgtgaagtccaacacgggaccaggggag
aatctacgcaactccctgtggcacactggtgacagcagttacctggtgaagctgctgtgg
aaagacgtccgcaacgtgggctggaaggacaagacttcctaccgctggttcttgcaacac
aggccccaagatggctacatcagagtgcgtttctttgagggtcctcagatagtggcagac
acaggtatcatcatagacatcaccatgagaggaggcagactgggtgtcttctacttctcc
caggagaacataatctgggctaacctacgctatcgctgcaatgatacaacccatgaggac
tttgactcataccaagtccaacccgttcagctacagttctaa
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