Oncorhynchus keta (chum salmon): 118388333
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Entry
118388333 CDS
T09424
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oke04121
]
118388333
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118388333
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
118388333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Prok-RING_4
Sina_ZnF
zf-TRAF
PDZ_Tricorn
TRAF3_RING
zf-rbx1
U-box
RING_XB3-XBAT31
LemA
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
118388333
NCBI-ProteinID:
XP_052382585
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All DBs
Position
10:19436900..19580826
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AA seq
1062 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCASCVLPWVIQKSSCPVKCQRIS
TTELNHVLPLKNLILKLDIKCDNHARGCEKVVKLHHLAEHAEMCDYSPAKCRNKGCKEVL
NLKDMDAHMRESCDYRPVGICDSGCGLMLIHKEQKLDTHCCLKAMKAHNSALHGKVVNLD
KEFKKQSLKSSKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLTRTLAPPCKGG
ETKNLTAILHREGGSLGFNIVGGRPCADDHEGTSNEGIFVSKIVEKGPTDKEGGLQIHDR
IMEVNGKDLSKATHDQAVEVFRTAKEPIMVHVLRRAPRPKPSIPASDTEVVDISTQTDIT
FQHIMALTKLPASTPAVAVLEQYLMPEEHSPGHEYFDPNDFLEGMQQEMDREELEYEEVD
LYRTNIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EDAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRTDESTRNDESSEQENLGDDQTT
ASNTLGSCSRSRRKLTYSQDTLGSTELPFSSESFISADYDHADFLGIPADECERFRELLE
LKCQVRSVGGPHGLYCQSARAGRAEEGVDKELELLNEELHSIELECLNIVRAHKMQQLRE
QYRESWMLHNSGFRNYNTSIDARRHELSDINELPEKSDKDSSSAYNTGESCRSTPLTLEL
SPDNSLQRREENQGEAGAYSSTGLNNKILKPLLSPVQEADGPGRIRPSSSKESECDLQAE
EKECKLGESTHKLAQPRSLYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSLVSR
GDPVTPRDMLEPKKEWKVKIRSDGTRYITKRPIRDKLLKERALRIREERSGMTTDDDAIS
ELKIGRYWSKEERKQHAVRAKEQKQRREFMKQSRADCLKEQASLDDDKKEPNIIELSHKK
MMKKRNKKIFDNWMTIQELLTHGAKSPDGTRVYNSLLSVTTV
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagttggatcggtttaaaggggctgtggacccagattttaaatgcaatttg
tgtaataaagttctagaagacccgctcactactccgtgtggtcacgtcttctgtgcaagc
tgtgtgctgccatgggttatccagaaaagcagctgccccgtcaaatgtcaaaggatctcc
acgacagagctgaaccacgttctccctctgaaaaacctgattctgaagctggacataaag
tgtgacaaccatgccagaggctgtgaaaaagtggtaaagctgcatcatctagcagagcac
gccgagatgtgcgattactcaccggccaaatgcaggaataaaggatgcaaggaggtgctc
aatctgaaggacatggatgcccatatgcgggaatcgtgtgattacagaccggtcgggata
tgcgacagtggatgtggcttgatgctcatccacaaagagcaaaaactagacacccattgc
tgtttgaaagccatgaaagcacataatagtgctttgcacgggaaggtggtcaacttggac
aaagagttcaagaagcaatcattgaaatcaagcaaaagagagaaatcacttcttgctcaa
ctctccgcggtgcacaatgagctacaaatgacagcgctgaagtatcagaagaaattcact
gaatacagtgcaaggatcgattcgctgactaggacccttgctcccccgtgcaagggcggg
gagacaaaaaacctcacagccatccttcatcgggagggaggttctctgggcttcaacatc
gtgggaggacgaccatgtgcggacgaccatgaaggcacttcgaatgaaggaatttttgta
tccaagatcgttgagaagggaccaacagacaaggaaggaggccttcagatccacgacaga
ataatggaggtgaatgggaaggacctgtccaaggccacccatgaccaggcagtggaggtc
ttccgcacggccaaggagcccatcatggtccatgtgcttcgccgggccccccgccccaaa
ccctctatccctgcctcagacaccgaggtggtagacatcagcacccagacagacatcacc
tttcaacacatcatggccctcaccaagctacctgcctccacccctgccgtggctgtgctg
gagcaatacctaatgcctgaggagcattcccctgggcacgagtactttgaccccaatgat
ttcctggagggcatgcagcaggagatggatcgagaggagctggaatatgaggaagtggat
ttgtacagaaccaacatccaggacaagcttggtttgactgtctgctacaggactgatgat
gaggacgagactgggatctatgtcagtgagattgacccaaacagcatcgctgcaaaggat
ggtaggatcagagagggagatagaattatccagatcaatggaattgagatccagaaccga
gaggatgctgtggctttgttgaccagtgaggagaatcagaatgtgtgcctactggtagcc
agaccagagatccagctggatgagggttggatggatgacgacaggaatgacttcctggat
gacctccacatggacatgctggagcagcagcaccaccaggccatgcagttcaccgccagc
atgctgcagcagaagaagcatgaggaggatggtggaacaacggacacagccaccctgttg
tccaaccaccacgagaaggatagtggggttggccgcaccgacgagagcacgcgcaccgac
gagagcacacgcaacgacgagagctctgagcaggagaacctgggggatgaccagactaca
gcctccaacacactgggcagctgcagccgcagccgcaggaagctgacctacagccaggac
accctgggcagcactgaactgcctttcagcagtgagtccttcatctctgcagactacgac
catgctgacttcctgggtatccctgcagatgagtgtgagcgcttccgagagctcctggag
ctgaagtgccaggtgaggagcgtggggggcccccatggcctgtactgccagagtgccagg
gccggaagggccgaagagggggtggacaaggagctggagctgctgaacgaggagctgcac
agcattgagcttgaatgcctcaacatcgtccgggcccacaagatgcagcagctaagggag
cagtaccgtgagtcgtggatgctgcacaacagcgggttccgcaactacaacaccagcatc
gatgcgcgccgccacgagctctctgacattaacgaacttcccgagaagtcggacaaggac
agctccagcgcctacaacactggagagagctgccgcagcacccccctcaccctggagctg
tccccagacaactccctccaaaggagggaagagaaccagggcgaggccggggcctatagc
agcacagggctcaacaacaagatcctcaagcccctgctgtctcctgtccaagaggccgat
ggtcccggcagaatcaggccctcctcctcgaaggagtctgagtgtgacctgcaggcggag
gagaaggagtgtaagctgggagagtctactcacaagctggcccagccccgctccctgtac
aaacacgcccacatcccggcccatgcccagcactaccagagctacatgcagctgatccag
cagaagtctgccgtggaatatgcccagagccaaatgagcctggtcagtctggtcagccgc
ggtgaccctgtgacccccagagacatgctggagcccaagaaggagtggaaggtgaagatc
cgcagcgatggcacacgctacatcaccaagaggcccatcagggacaagctgctgaaggag
cgcgccctgcgtatccgcgaggagcgcagcggcatgaccacagacgacgacgccatcagc
gagctgaagatcgggcggtactggagcaaggaggagaggaagcagcacgcggtgcgcgcc
aaggagcagaaacagcgccgcgagttcatgaagcagagccgcgccgactgcctgaaggaa
caggccagcctggatgacgacaagaaggagcccaatatcattgagctgagccacaaaaag
atgatgaaaaagaggaacaagaaaatctttgacaattggatgactatccaggaacttttg
acccacggtgctaagtcgcctgacggcacgcgagtgtacaactccctcctgtctgtcacc
acagtgtag
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integrated database retrieval system
