Oncorhynchus keta (chum salmon): 118388562
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Entry
118388562 CDS
T09424
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118388562 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118388562 (smarcc2)
03036 Chromosome and associated proteins [BR:
oke03036
]
118388562 (smarcc2)
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118388562 (smarcc2)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118388562 (smarcc2)
PBAF complex
118388562 (smarcc2)
GBAF(ncBAF) complex
118388562 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
118388562
NCBI-ProteinID:
XP_035633650
LinkDB
All DBs
Position
10:34015117..34029217
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AA seq
1063 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTRLPTKSFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKRHQGSVTEDKTSSSHVVVP
IPASLEEEEWVRLVMKRDKQVLLHWGYYPDSYDTWISASEVEAAVEEAPSPEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPGDERRDKKPGSAKKRKRSP
SPSPTPPPQESKKKNTKKGCGPTTPYTKSKRGQREEEPEDLTKDLDEPSPVPAVEEVTLP
KTANTKKDSESTPVKGGTMTDLDEQEDESMETAGKEEEEGSPSVKGEPVKGSDLHEDNVT
EQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQ
EYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTP
SSLVPLQPKASQTPAAQQILSFPDKVKEKQPADLQNFGLRTDMYSKKTGPPKSKTAASAM
RDWTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDTSSSLGP
LAYQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRR
VEEAARTSGRQDPLYGLEGSGIAGTSLEEGEKPEESSEESKSDSQSSEEKRETKENKEGA
MEEGEKQGENGKKEEERGREGEGEGEQEAEKTDSEMGDGEKDKEGKEGSEESQREGESEG
ERKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKL
RHFEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQQHSQTGGP
HSATAPTGPPPPPQGPSATQSQPTLSTPAPQPAPSPAPPTTSIPSSAQPAEPQPPPSGPH
TSPPRPPGQPPTAHSSTTPTLHEPSAPLPEDTHHSSAPVPPPQ
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaacgtaaaatatttcgaagcgtctgataca
gtctcgcagttcgacaatgtccgcgtttggttgggcaagaattataaaaagtacatccag
gcggagccccccaccaacaagtctctgtccagcctggtggtccagctgctgcagtttcag
gaggaggtgttcggacgacatgtcagcaacccacctctcaccaggttgccgacgaagagt
ttcctggactttaagtctggtggggctctatgccacattctggctgcagcctacaagttc
aagagcgatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaat
gtggagatgttcatgactatcgagaaatctctagtacagaacaactgtctgagtcgacca
gtgatctacctgagctctgacattgaggccaagctactggggaaactgaaggacatcatc
aagaggcaccagggctcagtgactgaagacaagacgtccagctcccatgtggtggttccc
atccctgccagtctggaggaggaggagtgggtgcgtctggtaatgaagagagacaagcag
gtgctgctccactggggatactatcctgacagctatgacacctggatctcagccagtgag
gtggaggctgctgtggaagaagcgcccagcccagagaaacccaggaaggtccatgccaag
tggatcctggaccttgaccagtttaatgagtggatgaatgaggaggactatgaggttggg
gaggggggccccaagagaaagagaatctcagccaagaccctgacggatgaggtcaccacc
ccaggggacgagcgtcgtgacaagaagcccggcagtgccaagaagaggaagcgctcaccc
tccccctcgcccaccccaccaccccaggagagcaagaagaagaacacaaagaaagggtgt
gggcccaccaccccgtacactaagtctaagcgaggccagagagaggaggagccggaggat
ctgactaaagatctggatgaaccatcacctgtacctgcagtggaggaggtcaccctacct
aagacagccaacactaagaaagactctgagtcaacaccagtaaagggaggtaccatgaca
gacctggatgagcaagaggatgaatccatggaaactgcaggaaaggaggaggaggagggc
tctccgagtgtgaagggagagccggtgaaagggtcggaccttcatgaggacaacgtgacc
gagcagacccaccacatcattatccccagctatgctgcctggttcgactacaacagtgtc
catgctattgagcgtagagccctcccagagtttttcaacggcaagaacaaatccaaaacc
cctgagatttacctggcctacaggaacttcatgatagacacttacaggctgaacccgcag
gagtaccttacctctaccgcctgtcgtaggaacctggccggagacgtgtgcgccatcatg
agggtgcatgcgttcctggagcagtggggtctgatcaactaccaggtggactcagagagc
cggcccacccccatgggccccccgcccacctcccacttccacgtcctggctgacaccccc
tccagcctggtgcccctgcagcccaaggcctcccagactccggcggcccagcagattctg
tccttcccagacaaggtgaaggagaagcagccagccgacctgcagaactttggcctgagg
acagacatgtacagcaagaagactgggcctcctaagagtaagactgctgccagcgccatg
cgagactggaccgaacaggagacactactgctgctagagggtctagagatgtacaaggat
gactggaacaaggtgtcggagcacgtgggctcacgtacccaggacgagtgtatcctgcac
ttcctgcgtctgcccatcgaggacccatacctggaggacacgtcctcgtccctgggcccc
ctggcctaccagcccgtccccttcagccaggcaggcaaccctgtcatgagcaccgtggcc
ttcctggcctccgtggtggacccccgcgtggcctccgcagccgccaaatctgccctggag
gagttttcccgtatgaaggaggaggtcccagcagcactggtggaggcccatgtgaggagg
gtggaagaggcggcgcggaccagtggcagacaggaccccctctatggcctggaaggcagc
ggcatcgcaggcaccagcctggaggagggagaaaaacctgaagagagcagtgaggagagt
aaaagtgacagccaatccagtgaagagaagagggagaccaaggagaacaaagagggagcc
atggaagagggggagaagcaaggagaaaacgggaagaaggaggaggagagaggaagagag
ggagaaggagagggagagcaagaggctgagaagaccgactcggagatgggtgatggagag
aaggataaggaagggaaggagggctcggaggagagccagagagaaggagagagtgaggga
gagaggaaggctaaggtggagcgggatgtgggagaggggaacctggctaccgcagctgcc
tctgccctagctgctgctgccgtcaaagccaagcacctggctgctgtggaggagaggaag
atcaagtctctagtggctctgctggtggagactcagatgaagaagctggagatcaaactt
agacactttgaagagctggagaccatcatggaccgagagagggaggcgttggagtaccag
aggcagcagctgctggcagaccgtcagtcgttccacatggagcagctgaaatatgcagag
atgagggcgcgtcagcagcacttccaacagatccagcagcacagccagactggaggccca
cactccgccacggcccccactggccccccacccccaccccagggcccctcagccacccag
tcccagccaaccctcagtacccctgcaccacagccagctcccagcccagcaccccctaca
acctccatcccttcctctgcccagcctgctgagccccagccgccccccagtggtcctcac
acctcacctccccgcccgccaggccagccccccacggcccactccagcaccaccccaaca
ctccacgagcctagtgcccctctacctgaggatacacaccactcctcagccccagttccc
cctccacagtga
DBGET
integrated database retrieval system
