Oncorhynchus keta (chum salmon): 118389208
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Entry
118389208 CDS
T09424
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118389208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118389208
03009 Ribosome biogenesis [BR:
oke03009
]
118389208
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118389208
Spliceosome [BR:
oke03041
]
Complex A
U1 snRNP components
U1 related factors
118389208
Complex B
118389208
Ribosome biogenesis [BR:
oke03009
]
Eukaryotic type
Pre-60S particles
Helicases
118389208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
118389208
NCBI-ProteinID:
XP_035634938
EnsemblRapid:
ENSOKEG00005003388
LinkDB
All DBs
Position
10:64719292..64727887
Genome browser
AA seq
630 aa
AA seq
DB search
MPGFSDRDRGRDRGYGAAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVTRRPPQEVENYLRSKDVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQY
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGGRGGGGRGGFRDDRRDRYSGGRSYGGGGGGSYRDKDSDRGFGGGPKSAFGTKTQNGVG
YGGSTYDKGASSGGSYGNSYGSNGQASFGATNQVGAFGGQNFQAPPQFGAAQVAAPNGMG
RPPFPFNPQAQQSQQPPPMVPYSMPPPFPQ
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggcagagacagggggtatggagctgcacctcgt
tttggaggcggcggtggtggcagtaggggtggaccccctcaggggaaatttggcaaccca
ggggaaaggctgcgcaaaaaacactggaacatggatgagctcccaaagttcgagaagaac
ttctaccaggagcatccggatgtgacccgcagaccacctcaagaggtggagaactacctg
cgaagtaaagacgtaacagtgaaaggcagagactgccccaagcccatgatgaagtttcac
gaggccaattttccaaattatgtgatggatgtgattgccaaacaaggttgggctgagcca
actcctatccaggcgcagggctggcctctggccctcagtgggaaagacatggtgggcatc
gcccagacaggctccggtaaaacccttgcttatcttctacctgcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatatgtttggtgctggccccgacccgt
gagctggctcagcaggtgcagcaggttgccgctgagtacggcagggcctcccgcctgaag
tcagtctgcgtctatggtggagcccccaaaggaccccagattcgggaccttgagagaggt
gttgagatctgtattgccaccccagggcgtctcatagacttcctggaggctgggaagacc
aaccttcgcaggtgtacttaccttgtgctggacgaggctgaccgtatgctggacatgggc
ttcgagccccaaatccgcaaaattgtggaccaaattcgaccggatcgtcagaccctcatg
tggagtgccacctggcccaaggaggtgcgccagctagctgaggacttcctgaagcagtac
gtccaaatcaacgtgggcgcgctgcagctcagcgctaaccacaacatcctgcagatagtg
gacgtgtgcaacgacggcgagaaggatgacaaactcctccggctgctggaagagatcatg
agcgagaaggagaacaagaccatcatctttaccgagaccaagagacgctgcgatgagctc
accaggaggatgagacgagatggctggccagcaatgggtatccacggagacaagagccag
caggagagggactgggttctcaatgagttcaaatacggcaaggcccccatcctcatcgcc
actgacgtggcctcccgcggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacagcccgcagtcaaaaa
acaggcactgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggctatcaaccccaagctcctccagatggcagaggcc
agaggaggtcgtggcggggggggaagaggtggctttagggatgaccggcgagataggtat
tctggggggaggagttacggtggtggtggtggtggtagttacagggacaaggatagcgac
agggggttcggagggggaccaaagagtgccttcggcacaaaaacccaaaacggagtgggc
tatggcggtagcacctatgacaagggcgctagctctggcggtagctacggcaacagctac
ggcagcaacggacaggctagcttcggcgccaccaaccaggtgggtgcgttcggaggccag
aacttccaggcccctccacagtttggagctgcacaggtggctgccccaaacggcatgggt
cgtccgccattcccctttaacccacaggcacagcagtcccaacaacccccacccatggta
ccctactctatgcctccccctttcccacagtaa
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