Oncorhynchus keta (chum salmon): 118389731
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Entry
118389731 CDS
T09424
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118389731
03036 Chromosome and associated proteins [BR:
oke03036
]
118389731
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
118389731
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
118389731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
S1
S1_RRP5
HHH_9
HHH_3
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
118389731
NCBI-ProteinID:
XP_052313405
LinkDB
All DBs
Position
11:52231070..52289765
Genome browser
AA seq
1791 aa
AA seq
DB search
MEEYFTFSGDRNNINLCMMQSDSSFAIRWKTVSPLSGLADMSDFIDSEAEESEEEFEEKD
LKPKKTQAFMDDEEEEEELNTEDQDEHGNLRGLIDDDVDEDEEAEEKKSGGAGSGSDSED
EVRHRHKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKYDRVKLMDDDEDDEKDQIADEIF
HGGDGEGELEEGETVDPPLHRHGERHDEEEEEEGEEESDIDDFIVDDDGQPITKKRGKFS
GYTDAALQEAQEIFGGDFDFAEFDADGAYDQGEEEEEDQDEEGWDRPKKQTKRRVGRKSI
FEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSIPVKPAEDNELEEEAEWIYRNAFSTP
TISMQESTDYLDRGTTTNLGRKGPSTIAKIKEALNFMRNQHFEVPFIAFYRKEYVEPELN
INDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQSHQYEQISADPDKPLADGIRPLDTADME
RLKDVQSIDELSDVYSHFLLYYGRDIPKMQNTAKAASKKKTLRKIKEVNEDGEEEEVEVE
EEEEQKGPDLKLASRRDMYSICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQFPAE
PVELAKDYVCSQFNSPEAVLEGTRYMVAMQISREPLVRHVLRQTFQERAKININPTKKGK
KDMDEAHFGYSFKYLKNKPVKELNGEQFLKMCQAEEEGLLTIDICIDLLGVKGFAGDPTY
FDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQFLYPQMAKELKNKLIAEAKDNIIKSC
CRRLYNWLKVAPYRPDQQQAEEEDDDLMDESQGKGIRVLGVAFADSRDTPVFCSLINGEG
EVVDFLRLPYFLKRRNAWREDERDKKLQDIENLKKFLISKKPHVVAVAGENRDAHMIMED
IKRTVSELEQESSLPAVGVELVDNELAMLYMNSTKSQTDFRDYPPLLRQAVSVARKIQDP
MVEYAQVCSTDEDILCLKLHPLQEHVVKEDLLNALYCEFINRVNEVGVDVNRAICHPYTQ
SLVQFVCGLGQRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFINCAGFIKIDTASLG
DSTESYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLD
LDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVPYRAPNTEEVFNLLTKETPETFYI
GKLITSVVTGIAHRRPQGESYDQAIRNDSTGLWQCPFCQQDNFPELSEVWNHFDSGSCPG
QAIGVRSRMDNGVQGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMKIDIEKFNVDLTCRT
SDLMDKNNEWKLPKDTYYDFDAETEDTKAEEELKKKQQRTTYIKRVIAHPSFHNINFKQA
EKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQHVDVREEGKENAFSLGHTLWIYTE
EFEDLDEITARYIQPMAAFARDLLGHKYFQDCNGGDKKKMEELLIRCKKEKPAFIPYFVS
ACKDLPGKFILGYQPRGKPRVEFVTISPDGFRYRSQMFPTVNGLFRWFKDHFQEPVPGIT
PSSSSRTRTPASVNATPANINIADLTRAVNALPRNMTSQMFSAIAAVTGQGQGQNANTTP
AQWGSSQYGYTGGSSGGGGGNSSAYHVFATPQQPMSTPMMTPSYSYTTPSQQTMGTPQYP
SSTPLSSHGHTQSSQGQGHSSSNSHHGHSSNTPSSSSTSSRGRTPQLPKSSGSTAVDWAK
MAEQWLQDKEAERKKQKTPRMTPRPSPSPMIESTPMSIAGDATPLLDEMDR
NT seq
5376 nt
NT seq
+upstream
nt +downstream
nt
atggaggaatatttcactttctctggtgataggaacaacattaatttgtgcatgatgcag
agcgactcgagtttcgccatcagatggaagacggtgtcccctctttctggccttgcagac
atgtctgacttcatcgacagcgaggctgaggagtcagaggaggaatttgaggagaaagac
ctgaagcccaaaaagacccaggcgtttatggatgatgaggaagaggaggaagagttaaac
acagaggaccaggatgagcacgggaacctgagggggctcatcgatgatgatgtggatgaa
gatgaagaagcggaagaaaagaagagcggaggagcgggtagcggcagcgactcagaggat
gaagtcagacacaggcacaaaaaacgcaactatgatgactacctggatgatgatgacctg
gacctcattgaggagaacttgggggtcaaagtcaagaggaggaagaagaagtatgaccgc
gtgaagctgatggatgatgatgaagatgacgaaaaggaccagattgcagacgagatcttc
cacggaggagacggagagggggagctggaggagggagagaccgtcgacccgcccctccat
cgccatggtgaacgccacgatgaagaggaggaagaggaaggagaggaggagtcagatatt
gacgactttattgtggacgacgatggccagcccatcacaaagaagagaggcaagttctca
ggatacacggacgcagccctccaggaggcccaggagatcttcggcggtgattttgacttt
gcagagtttgatgctgacggagcatatgaccagggtgaggaagaggaggaggaccaggac
gaagagggctgggaccggcccaagaagcagacgaagaggagagtggggaggaagagcatc
ttcgagatctatgagcccagcgagctggagagtagtcacatgacagaccaggacaacgag
atccgctccacagacatgccagagaggttccagctgcgctccatcccagtgaagcctgct
gaggataatgagttagaggaagaggcagagtggatctacagaaatgccttctcaaccccc
accatctccatgcaggagagtacagactatctggacagagggaccaccacaaacctcggc
aggaaaggccccagcaccatcgctaagatcaaggaggccctcaacttcatgaggaaccag
cactttgaggttccgttcatcgcattctacaggaaggagtatgtagaaccggagctcaac
atcaacgacctgtggaaggtttggcaatgggacgagaagtggtgccagctgaagagcagg
aagcagaacctgacacgactgttccggaggatgcagtcgcaccagtatgaacagatctct
gccgaccctgacaaacccctggctgatggcatcagacccctggacacggctgatatggag
agactgaaagacgtccagtccatagatgagctgagtgatgtgtacagccactttctgctg
tactacggcagagacatccccaagatgcaaaacacagccaaggccgccagtaagaagaag
acgctgaggaagatcaaggaggttaacgaggacggtgaggaggaagaggtggaggtggag
gaggaggaagagcagaaggggccagacctgaagctggcatctcgtagagacatgtacagc
atctgtcagagcgcagggctcgacggcctggctaagaagtttggtctgactccagagcag
tttggggagaatctaagagacagctaccagcgccacgagacagagcagttccctgctgag
cctgtagagctggccaaagactatgtctgcagccagtttaacagtcctgaggcggtgttg
gaggggactcgttatatggtggccatgcagatttccagggagcctctggtcagacacgtc
ctcagacagaccttccaggagagagccaagatcaatatcaatcccaccaagaaaggaaag
aaggatatggatgaggcccattttggctactccttcaagtacctgaaaaacaagccagtg
aaggagctgaacggagaacagtttttaaagatgtgccaggctgaggaggagggacttctc
accattgacatctgcatcgacctcctaggggtcaaagggtttgcaggtgacccgacgtac
tttgatgagatcaagcaattctattacagagatgagttcagccaccaggtgcaggagtgg
aacagacagaggaccctggccatcgaacgctccctcacacagttcctctaccctcaaatg
gccaaggaactcaagaacaaactcatcgcagaggccaaggacaacatcatcaagtcgtgt
tgcaggaggctgtataactggctgaaggtggctccctacagaccagaccagcagcaggcg
gaggaggaggatgatgatctgatggatgagagtcaaggaaaaggcatcagagtcctggga
gtggcctttgcagacagcagagacacgccagtgttctgttctctgatcaacggagaggga
gaggtggtggacttcctccgtctgccttacttcctgaagaggaggaatgcatggagggag
gacgagagggacaaaaagctccaggacattgagaacctaaagaagttcctgatcagtaag
aaacctcacgtggtggctgttgccggggagaatagagatgcccacatgataatggaggac
attaagaggacagtgagtgagttggagcaggagtcttctctacctgctgtgggagtggag
ctggtggacaacgaactggccatgctttacatgaacagcacgaagtctcagactgacttc
agggactaccctccgctgctgcgccaggccgtgtccgtagccaggaagattcaggatccc
atggtggagtacgcgcaggtctgcagcacagacgaagacatcctctgcctcaaactacac
cctcttcaggagcatgtagtaaaggaggacctgctgaatgctctgtactgtgagtttata
aaccgggtcaacgaggtgggggtggatgtgaacagggccatatgtcacccctacacacag
agcctggtccagttcgtctgtggcctcggacaaaggaagggatcgcacctgctcaagatc
ctaaaacagaacaacactcgtttggagaacaggactcagctggtcaccatgtgtcacatg
ggccccaaggtcttcatcaactgtgccggcttcatcaagatagacaccgcatcgctcgga
gacagtacggagtcatacatcgaggttctggacgggtccagggtacacccggagacgtat
gagtgggccagaaagatggcggtggacgctctggaatacgacgagtccgcggaggacgcc
aacccggccggtgcgctagaggaaatcctggaaaacccggagcgactcaaagacctggat
cttgatgccttcgctgaggagctggagagacagggttacggtaacaagggcataacgctg
tatgatatccgtgctgagctgagctgcaggtataaggacctgagagttccctacagagct
cctaacaccgaggaggtgtttaacctgctcaccaaggagacacctgagaccttctatata
ggtaagctgatcaccagtgtcgtgacaggcattgctcaccggcgcccacaaggggagagt
tatgaccaggccatcaggaacgactctaccgggctgtggcagtgccccttctgtcaacag
gacaacttccctgaactcagtgaggtgtggaaccattttgacagtggatcatgtccgggc
caggccatcggtgtgaggtctcgaatggacaacggtgtccagggcttcatccccaccaag
ttcctcagtgacaaagtggtcaagcaccctgaggagagggtcaaggtgggtatgaccgta
cactgtcgcatcatgaagattgacattgagaagttcaacgtggacctgacgtgtcgtacg
tctgacctgatggataagaacaacgagtggaagcttcctaaggacacctactacgacttt
gacgcagagacagaagacactaaggcagaggaggaactcaagaagaaacagcagagaacc
acctatataaagcgtgtgatcgcccatccatcgtttcacaacatcaacttcaagcaggcc
gagaagatgatggagtccatggaccagggagatgttgtaatcaggcccagcagcaaggga
gagaaccacctcactgtcacatggaaggtggctgatggtatctaccagcatgtggatgtg
agagaggagggcaaggagaacgccttcagcctgggacacacactctggatctacacagag
gagtttgaggatcttgatgagatcacagctcgttatattcagccaatggcagcgtttgct
cgcgacctcctgggacataagtacttccaggactgtaacggaggggacaagaagaaaatg
gaggagttgttgattaggtgtaaaaaggaaaagcctgcgttcatcccctattttgtctca
gcctgtaaagacctgccagggaagttcatactggggtaccaacctcgcggaaaaccacgt
gttgagtttgtgaccatcagtcctgacgggttccgctaccgctcccagatgttccccaca
gttaacggactgttccgctggttcaaagaccacttccaggaaccggtaccaggcatcacc
cccagcagtagtagtcgaacacggacacctgcttctgtcaacgctacaccagctaacatc
aacatcgcagacctgacgcgagctgtcaacgctctcccgcggaacatgacctctcagatg
ttcagtgccatcgccgcggtgacagggcagggccagggccagaatgccaacaccacaccc
gcccagtggggctccagccaatacggttacaccgggggcagcagtgggggtgggggaggc
aactcctcagcctatcacgtatttgcaacgccccagcagccaatgtcgacgcccatgatg
acccccagctactcatacaccacccccagccagcaaaccatgggtacgccccagtacccc
tcctccacccccttgtcctcccacggacacacacagagcagccaagggcagggccacagc
agcagcaacagtcaccatggacactcgtccaacacaccttcctcctcctccacctcttcc
agaggacgcacgccacagctgcctaagtcgagcggcagcacggcggtggactgggccaag
atggcggagcagtggctccaggacaaggaggcggagaggaagaagcagaagacccccagg
atgaccccacggccttcccccagccccatgatcgagagcaccccaatgtccatcgctgga
gacgcaacaccccttctggacgagatggaccgatag
DBGET
integrated database retrieval system
