Oncorhynchus keta (chum salmon): 118389873
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Entry
118389873 CDS
T09424
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118389873 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oke03400
]
118389873 (lig3)
Enzymes [BR:
oke01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118389873 (lig3)
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
118389873 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
BRCT_2
Motif
Other DBs
NCBI-GeneID:
118389873
NCBI-ProteinID:
XP_035635719
LinkDB
All DBs
Position
11:20287823..20313626
Genome browser
AA seq
1029 aa
AA seq
DB search
MQRFCISLALKTVDNIHFGKLCRCQPTWKLFVAYPLSANFQILPHCRGILPYPLGCHQCT
QPPWNRSLSLDSNFKVCWRHYCTNQTDMAEQRYCVEYAKRGTAGCKKCKDKIMKGLTRIG
KIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINKL
VGDLMAKANTSPKKKVQAKLNNSGQLSAPPADPSLNAPRKFSGFTATKAGSSSSPGPSPA
KPNQGSPLSVQLCDPKHKDSLLREFRKLCAMVADKNSYNVKTQIIHDFLKKGSGGDKFKG
DVYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETVRMFFEEG
KSFPPAAKSLLTIQEVDASLTRLAQLTKEDDQQKELEDISKKCTGNDLKCIIRLIKHDLK
MNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDATNGSGPRKLLTIEASLMTPV
QPMLAEACKSIQYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHF
KEFIPQAFVGGNSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFEDAKVCLFVFDCIYFN
GVSLMEKPLYERRKFLHDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKD
LKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPNSK
KWCTVTKCSGGYDDAMLTRLQKELDMIKISKEPSKIPGWLKIIKNYYPDFIIRDPEKAPV
WEITGAEFSKSEMHTADGISIRFPRMTRVRDDKDWKSATNLMQLKELFRISKERCDFEVT
AGPSKGGEDDKGSSGDSGSNSPPSTSQRPVTPRKTSTGNSNTPKAKAVKTEPPSPVPATK
RKIHSEEPSAKKVKTETVHHSNGQSKNGQSKTKMAPSMLAEPRNDKTSCSPQTLLDIFSG
VKLVLPDSVQDHTKLRRYFVAYDGDLVPEYDAASATHTLTEPEEDSHAQRVTPGWIWECI
RKRRVVPPC
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgcagagattctgtatttcattggcacttaagactgtagacaatatacattttgggaaa
ctgtgcaggtgtcaacccacctggaaactgtttgtcgcttatcccttatctgcaaacttc
caaattctaccccattgtaggggcatcctcccctatccattgggctgccatcagtgcacc
cagcccccttggaatcgcagtctttcactagattccaatttcaaggtttgctggcgtcac
tattgtactaaccagacagacatggctgaacagagatactgtgtggagtatgccaaacgt
ggcactgcgggatgtaagaagtgtaaggacaaaatcatgaagggcttgacccgcatcggg
aagattgtgcctaacccattcagtgagtctgccggggagatgaaggagtggtaccatgtg
aagtgtatctttgagaagctggagcgggcccgggccaccactaagaagatcgaggacatc
acagacctggagggctgggaggagctgcaggatgaggacaaggagctcatcaacaaactt
gttggagacttgatggccaaagctaacacgagcccaaagaagaaggtgcaagccaagctg
aacaacagtggtcagctatcagctccgcctgctgacccttctctgaatgcaccacggaag
ttctctggcttcacagctactaaggctgggagctcaagcagcccaggcccttccccagcc
aaacccaaccagggcagtcctctttccgtacagctctgtgaccccaaacacaaggatagc
ctgctccgggagttccgcaagctctgtgccatggtggcagacaagaatagctacaatgtc
aagacacagatcattcacgacttcctgaagaaaggctcagggggagataaattcaaggga
gatgtgtacctgacggtgaagctgcttctcccaggggtggtgaagagtgtgtacaacctc
aacgacaaacagattgtcaagctcttcagccgcatcttcaactgcaaccaggaggagatg
gtgcgagatctggaacagggggatgtgtcagagacagtgaggatgttttttgaagaaggc
aagtctttcccaccggctgccaagagtctgctcacgattcaggaagtggatgcgtccctt
acccgtctggcccagttaaccaaggaggatgaccagcagaaagagctagaggacatatcc
aaaaaatgtaccggcaatgacctgaaatgtatcatcagactcattaagcatgatctaaag
atgaactctggagctaagcatgtcttggatgcagtggacccgaatgcctacgacgctttc
aaggcctcccgtaacctaggggacgtgatagagcgcgtgctgaggaaccagcaggatgcc
accaacggctcaggccccaggaagctcctcactattgaagcctccctcatgaccccagtg
cagcctatgctggctgaggcgtgcaagtccatccagtacgccatgaagaagtgccccaac
ggcatgtactctgaaatcaagtatgacggcgagcgtgtccaggtccacaagaatggagac
cacttcagctacttcagccgcagccttaaacctgtgttgccacacaaggtggcccatttt
aaagagttcatccctcaggccttcgttggtggcaacagcatgatcctggatgccgaggtg
ctcctcatcgacaccaataccagcaagccactacccttcgggacactaggggtgcacaag
aaagcagcctttgaagacgccaaagtgtgcttgtttgtcttcgactgcatctatttcaac
ggcgtgagcctgatggagaagcccctgtacgaacgaaggaagttcctccatgacaacatg
gtggaggttcccaacaggatcctgttctccgagatgaagcacgtcactagggcggctgac
ctggccgagatgatcacacgggtcatcagagagggactggaggggctggtcctcaaagac
ctcaagggcacctatgagccagggaagcgccactggctgaaggtaaaaaaggactacctg
aacgagggagcaatggccgacacagcagacctggtggtgctgggagctttctatggcaaa
ggctcaaacggcgggataatgtccagtttcttaatgggctgctatgacccgaactctaag
aagtggtgcaccgtgaccaagtgctccggaggctacgatgacgccatgttgacccgactc
cagaaggagctggacatgatcaaaatcagcaaggaacccagtaaaatccctggctggttg
aaaatcatcaagaactattaccctgattttattatccgtgatcctgagaaagcgccggtg
tgggagatcacgggggcggagttctccaagtcggagatgcacaccgccgacggcatatcc
atccgcttcccccgcatgacgcgtgtccgtgacgacaaggactggaagagcgccaccaac
ctgatgcagctcaaagagctcttccgcatctccaaggagaggtgtgactttgaggtgaca
gcagggccctccaaaggaggtgaggatgacaagggctcttcaggagacagtgggagcaac
tctccaccctccacctcccagagaccagtcactcccagaaagaccagcacaggcaacagc
aatacccccaaagctaaggcagtaaagacagagcctccctcccctgttccagcaaccaag
aggaaaattcactcagaagagcccagcgcaaagaaggtaaagactgaaactgtccatcac
agtaatggacaaagcaagaatggacaaagcaagactaaaatggccccctccatgttggca
gaacccaggaatgacaagacttcctgctctccccagactctactggacattttcagtggt
gtcaagcttgtcctgccagactctgtgcaggaccacaccaagctgcggcgctactttgtg
gcctacgacggggacctggtgccggagtatgacgccgcttcggccacacacaccctgact
gagccagaggaggacagccatgcccagagagtcacccccggctggatctgggagtgtatc
cgcaagagacgggtggtgcctccctgctga
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