Oncorhynchus keta (chum salmon): 118389889
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Entry
118389889 CDS
T09424
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04270
Vascular smooth muscle contraction
oke04625
C-type lectin receptor signaling pathway
oke04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
118389889 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
118389889 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
118389889 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118389889 (arhgef12b)
Membrane trafficking [BR:
oke04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
118389889 (arhgef12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
118389889
NCBI-ProteinID:
XP_035635740
LinkDB
All DBs
Position
11:complement(20889916..21017282)
Genome browser
AA seq
1523 aa
AA seq
DB search
MSGIQSTLPERFSKKATRTPSILSKDHPPDKKPKSDKNTVPPVHEFDPTDVPVQLSGCVV
AEGSPSEPCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKV
NGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLAQISLSEGEGGDLSSFLSSPHSPGPT
GGTGERCVTSSTSPQDHITSPLPLWEENNALHSQKVDILQKMLTKEQEDLQAMKEVYSRN
PTEKLLKDIQEAKKHIPLLQSQLSKATGTPQDGSLSHQDGEVEEGGIEAADGEQTPSSQG
ESSSDGPWTNNAVSPSPLPENPCQRETPCHSPKTTPRESLNSCPSPDTEDTADLNCNFQS
SVGSPFSRLNPQIIGAEDDYFDTEQEQINGQCSCFQSIELLKSRPAHLAAFLHHVVSQFD
PAPLLCYLYADLYKQTNSKETRRIFMDFHTFFMDRAANLKVAVPESMTSELERRRPELIP
EELHRPYIQLLQDTLLPDIQRNLEDFRQKRSMGLTLAEGELAKLDTERVRDRVSLERERS
CAEHIISKIEEVLLTSQPTEEEKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPK
IKKSIKPEKEGEEKVKKPRFPSILGPPRRPSRVDSASISKAMELNKHRGPQKQLSQPALS
VFEQPEFSAGGIRARSQFSDPGSDAATHPLAYIAPPPHSAPASQGSDPTGRDSDSGLTPS
SVLPRLSTDGLHSGDTLDGMVHLTSTHFDFSPCTLDQLQEEERESDRAQEGGTPKPAQRM
DGLGCGDVPSEDDQGNEIECEQDPPNWQALVSREVLAGLTPQEIKRQEVINELFYTERAH
LRMLKVLDNVFCQKLTRDSILPPGDIKHIFTNLEEIVQLHVWITEQMMVIRKKNETSVID
LIGDDLLAWFSDDEEEKIKRAVGTFCSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCR
RLQLKDIIPVEMQRLTKYPLLLESIAKYTEDAEERDKVKRAGECCRTILNYVNQTVKEAE
NKQRLEDYQRRLDLSSLKQSENPMISEFKSLDLTKKKMVHEGPLSWKVNKDKTIELYTLL
LEDILVLLQKQDERLVLKCHSKNLAGTADTKHIFSPIINLNTVLVRSVATDNKSFFVLSM
SDNGAQIYELMAQTVSEQRTWQCLITQSAETMKTKTHIIPLLQTDVERDAVEIISTGVPK
LNKDPERTSMGCTQSPEKDVTSLPGLQPTPTSTNPFDGVKSDDEEEEDSPLPDRREEQEE
EEEEVEEVDEEEVEAFLDGELADRLPILQERSRLGIAIDDEDPDDAFGMPPSRAEEALRT
LAALRQVLLNHMTSRAEGSDKDKEKGKEKEQRKGRAPGGRLLRTTSLRGPEDNNSISAPS
SVAAPSTGSETGASEKTEAGREEEAPGSNELPSGDTGFFETSEEYGSYMVLEGYGASGES
RTDNDGQARGGAQWGPDIDLKKLLSSSSQTGGAGPKLRRQVMTHIRLLQANLQHLKEVET
KYNELCQRLTETATDTEENKDNS
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcatacagtcaacactccctgaaaggttttccaaaaaagcaaccaggacccct
agcattctcagcaaggaccaccccccagacaagaaacccaaaagtgacaaaaacacagtc
ccacctgtgcatgagtttgaccctacagacgtgcctgtgcagctgtctggctgtgtagta
gccgagggaagcccctccgaaccctgtgggcttgtccagcgttgtgtgatcatccagaaa
gatgagaacggcttcgggttgacggtgagcggagacaaccctgtatttgtgcagttggtc
aaagaggatggcgctgccatgcgagcgggtgtccagacgggtgataggatcatcaaggtt
aacgggaccttagtaacacattcaaaccatgtagaagtcgtcaagctaataaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccggggctggcccagatctcgctgtcc
gagggcgaggggggagacctgtcctctttcctctcctcgccccactctcctggaccaacg
gggggaacaggggagcgctgcgtcacctcctccaccagcccccaggaccacatcacctcc
ccgctgcccctctgggaggagaataatgcacttcacagccagaaggtggacatcttacag
aagatgctgaccaaggagcaggaggatttacaggctatgaaggaagtgtacagcaggaac
cccacagagaaactactgaaggatatccaggaggccaagaaacacattcctctgctgcag
agccagctcagcaaagccacaggcacacctcaggatggctccctctcccaccaggatggt
gaggtggaggaggggggcattgaggcagccgatggagagcagaccccctcctcgcaggga
gaaagcagcagcgacgggccctggaccaataacgctgtgtctcccagtcccctccctgag
aatccgtgccaaagagagacgccctgccacagcccaaagaccaccccccgagagagcctc
aactcctgcccctcgcctgacacagaggacacggcggacctgaactgtaacttccagtcc
agtgtgggcagccccttctcccgtctcaacccccagataatcggagcagaggacgactac
tttgacacagagcaggaacagatcaacggtcagtgtagttgttttcagagtatagagctg
ctcaagtctcggcccgctcacttggccgccttcctccatcacgtggtctctcagtttgac
cctgcacctctgctatgctacctttatgctgacctgtacaagcagaccaactccaaagag
accagacggatcttcatggatttccatactttctttatggaccgagcagcgaatctgaaa
gtagctgtgcctgagtctatgacctctgaactagagcggcggagacctgagctgatccca
gaggaactgcacagaccttacatacagctgttacaggacacactgctaccagacatccag
aggaacctagaagacttcaggcagaagcgcagcatgggtctgaccctcgcagaaggggag
ctggctaagctggacacagagagggtgagagaccgcgtgtcgctggagagagaacgctcc
tgtgccgaacacatcatctccaagatagaggaggttctgctgacgtcacagcccacagaa
gaggagaagtgcactactatgcagtatgtcatcctcacctatatgaaacacctgggggtg
aaagtaaaggaaccacgtagcctagagcccaaacgagtccgcatcaacttcctgcccaag
atcaagaagagcatcaaacctgagaaagagggggaggagaaggtgaagaagcctcgcttt
cccagcatcctcggccctcctcggcggcccagccgcgtggactcagcttcaatcagtaag
gccatggagttgaacaagcatcggggcccccagaagcagctctcccagcccgccctcagc
gtcttcgagcaaccagaattctcggcaggcggcatccgtgcccgcagccaattcagcgat
ccaggctctgatgcggccacccaccccttggcctacatcgcaccgcccccccacagtgcc
ccagccagccagggctccgacccgacgggacgcgactctgactcgggactcactccctcc
tctgtcctgcccagactgagcaccgatgggctccactcgggcgacaccctggacgggatg
gtccacctaaccagcacccactttgacttcagcccttgcaccctggaccaattacaggag
gaggagcgtgaaagtgacagggctcaagagggaggcacgcccaaaccagcccagaggatg
gacgggttaggctgtggggatgtgccgagtgaggacgaccaggggaacgagattgagtgc
gagcaggaccctcccaactggcaggcgctggttagccgagaggtcctggcgggcctgact
ccacaggagatcaaaagacaagaagtcatcaacgagctcttctacacagagcgagcacac
ctgaggatgttgaaggtgctggataacgtgttctgccagaaactaacccgagacagcatc
ctgcctcctggagacattaaacacatcttcactaacctagaagagattgtccagctacac
gtgtggataacagaacagatgatggtcattcggaagaagaacgagacgtcagtgatagac
ctgataggagacgatctactagcttggttcagtgatgacgaggaggagaaaatcaagcgg
gcggtgggtaccttctgcagtaaccagccctttgccctggaactcatcaagacccggcag
aagaaagaccagcgcttcacctcctttatgcaggaggctgagagcaaccgtctgtgtcgc
agactgcagctgaaggatatcattccagtggagatgcagaggctgaccaagtatccacta
ctgctggagagcatagccaagtacacagaggatgcagaggagagggacaaggtgaagagg
gccggggagtgctgcaggacgatcctcaactatgtcaaccagacagtgaaagaggcagag
aacaaacagaggttagaggactaccagagacgcctggacctgtcctctctcaaacagagt
gagaacccaatgatctcagagttcaagagtctagacctgaccaagaagaagatggtgcac
gagggacctctctcctggaaggtcaacaaagacaagaccatcgagctgtacacgctgctc
ctggaggacatcctggtgctgctgcagaagcaggacgagcggttggtcctcaagtgccac
agcaagaacttggcgggcaccgccgacaccaagcacatcttcagccccatcatcaacctc
aacaccgtgctggtgcgctcggtagccaccgacaacaagtccttctttgtgctgtctatg
tccgacaacggagcccagatctacgagctgatggcccagaccgtgtccgagcaaagaacg
tggcagtgtctgataacgcagagcgcagaaaccatgaagacgaaaacacacatcatacct
ttacttcagaccgatgtggagcgagacgcagtagagattatcagcacgggggtgcccaaa
ctgaacaaagaccctgagcgcacctccatgggatgtacccagtccccagaaaaagacgtc
acttccttgccgggtctgcaacccacacccacatcgaccaacccatttgacggtgtcaaa
tcagacgacgaggaagaagaggactcgccactgccagacagaagagaagaacaagaagaa
gaggaggaggaagtggaggaggtagatgaggaggaagttgaagcttttctggatggagag
ctggcagacagactgcccatcctccaggagaggtcacgcctgggcatcgccatcgacgac
gaggatccagatgatgccttcggcatgccaccctccagagccgaggaggccctaagaacc
ttggcagccctgaggcaggtccttctcaaccacatgacgagcagagcagagggcagcgac
aaggacaaagagaaggggaaagaaaaagagcagaggaagggccgagcccctggaggccgc
ctgctgaggaccacgtccctgaggggcccagaggacaacaacagtatctcggccccaagc
agcgtagcagcaccctctactggctccgagaccggcgcctcggagaagaccgaggcaggg
agggaggaggaggccccggggtccaatgaactaccgtctggggacacaggtttctttgag
acttccgaggaatacggcagttacatggtcctggagggctacggggcctcgggggagagc
aggacggacaatgacggtcaggcgaggggtggggcccaatggggcccggacatcgacctg
aagaagctactctcctcatcctcgcagacagggggtgccggccccaaactcagacgccag
gtcatgacccacatccgcctgctccaggccaacctgcagcacctgaaggaagtggagacc
aagtataatgaactgtgccaaaggctgactgaaacagctactgacacagaggagaacaaa
gataatagttag
DBGET
integrated database retrieval system
