KEGG   Oncorhynchus keta (chum salmon): 118389984
Entry
118389984         CDS       T09424                                 
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03030  DNA replication
oke03410  Base excision repair
oke03420  Nucleotide excision repair
oke03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    118389984 (rfc2)
   03410 Base excision repair
    118389984 (rfc2)
   03420 Nucleotide excision repair
    118389984 (rfc2)
   03430 Mismatch repair
    118389984 (rfc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oke03032]
    118389984 (rfc2)
   03036 Chromosome and associated proteins [BR:oke03036]
    118389984 (rfc2)
   03400 DNA repair and recombination proteins [BR:oke03400]
    118389984 (rfc2)
DNA replication proteins [BR:oke03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    118389984 (rfc2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    118389984 (rfc2)
Chromosome and associated proteins [BR:oke03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    118389984 (rfc2)
DNA repair and recombination proteins [BR:oke03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     118389984 (rfc2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    118389984 (rfc2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_lid_RFC1 AAA_22 nSTAND_NTPase5 AAA_14 AAA_16 Mg_chelatase Viral_helicase1 AAA_11 RCF1-5-like_lid Rad17 RuvB_N AAA_19 MipZ nSTAND3 AAA_24 AAA_assoc_2 AAA_18 ABC_tran AAA_5 AAA_28 AAA_23 AAA_25 AAA_30 SLFN-g3_helicase MeaB NTPase_1 RNA_helicase DNAX_ATPase_lid FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 118389984
NCBI-ProteinID: XP_035635963
LinkDB
Position
11:complement(27567986..27574377)
AA seq 353 aa
MDVAMNEVDSEQIQTEVQLKKDESPAKLSSSGYELPWVEKYRPLKLNEIVGNEETVSRLE
VFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIK
MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI
QSRCAVLRYTKLRDEQIMMRLLEVVERENLVTSNDGLEAIIFTAQGDMRQALNNLQSTNS
GFGYINSENVFKVCDEPHPLLVKSMLEHCVNANIDEAYKIIEQLWALGYSPEDIIGNIFR
VCKTFQMPEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLGRLCSKTATPDTS
NT seq 1062 nt   +upstreamnt  +downstreamnt
atggacgtggcgatgaatgaggtagattctgaacaaattcaaacagaagttcaactgaag
aaagatgagtcccctgcgaagttgtctagtagtggatatgagctgccatgggttgaaaaa
tacagacccttgaagttgaatgaaatagtaggcaacgaggagactgttagcagattggag
gtgtttgccagagagggaaatgtgccgaacatcattattgcaggtccccccggtacagga
aagaccaccagtattctgtgtttggcgcgagctcttctgggcccagccatgaaagatgct
gtcctggaactgaacgcctccaatgacagaggcatcgatgtagttcgaaacaagatcaag
atgtttgcccagcagaaagtcaccctccctaaagggagacacaagatcatcatcctggat
gaggctgacagtatgacagacggagcccagcaggccttgaggaggaccatggagatatac
tctaaaaccacacgcttcgctttggcatgcaacgcctccgacaagatcattgagcccatc
cagtcacgttgtgcagtcctgcgctacaccaagctgagggacgagcagatcatgatgcgt
ctgctggaggtggtggagagggagaacctggtcaccagcaacgacggcctggaggccatc
atcttcaccgcccagggagacatgagacaggcgctgaataacctacagtccacaaactcc
gggtttggctacattaacagtgagaatgtgttcaaggtgtgtgatgagccacatcccctg
ttggtgaaaagcatgctcgaacactgtgtcaatgcaaacattgatgaggcttacaagatt
attgagcagctgtgggccctgggttactcccctgaggacatcatcggtaacatcttcaga
gtgtgtaagaccttccagatgccggagtatctcaagctggagttcataaaggagataggc
tacacccacatgaaggtggcagagggcgtgaactccctgctgcagatggcaggcctcctg
ggtcgactgtgcagcaagacggccaccccggataccagctaa

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