Oncorhynchus keta (chum salmon): 118390124
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Entry
118390124 CDS
T09424
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118390124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118390124
03036 Chromosome and associated proteins [BR:
oke03036
]
118390124
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118390124
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
118390124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
118390124
NCBI-ProteinID:
XP_035636266
LinkDB
All DBs
Position
11:35922941..35951038
Genome browser
AA seq
1806 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTSFGAATGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGAPSGTSTSLFGSTSTGGSGGL
FSQQSNAFGAAKPASFGTFGTSTASSGGLFGATNSNPFGGASTSLFGASGFTQQAAQPGT
TVKFNPPTGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRFEDYQAGRKGPTNPMA
APTGGLFGPAAAATPSTGTTGLFGSSATNTGFSFGQAKTSFGTSAGGFGAATGSLFGQQQ
PQQVQQAVSLFKPFGQVTTTPNTGFSFGSTMGQPQQTSTMGGLFGATAASQAGGLFGNTA
QTAPATGFGTGTGLFGQTNTAFGNVGTQGLFGNKTAGFGVTTTSAPSFGTGTGLFGNKPT
LSLGTATNTSNFGFGPTAAGGSLFGNKTAAGGLGMGASFGAVGTGQMSLFGNNKTLGSTL
GTMGGFGVQGFSTGNSTLGFGAPQQPVAMTDPNAVAAQQAVLQQQINALAYSPFGDSPLF
RNPLSDAKKKEERLKPTNPVAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQLFDGL
DDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDSDDLSSPPEYPLNGLGASVDE
DDDDVREVVEGGAENDLETKFYAKPNLQDTISELNGMGAGGRNGLEVSSEDVSLGDDSIQ
EERVEGPPHPAGIVLGRVGYYTIPAMDELAKMVDENGVCVVENFTVGRKGYGSVFFHGEV
NVTGLNLDEIVHFRRKEVIVYLDDKNKPAEGEGLNRRAEVTLDGVWPNDKTTCTQIKSRE
RLSEMNYEGRLENASRKQGARFLEYRSETGSWVFEVAHFSKYGLQDSDEDEEVPLKLDPK
KLKTATRLPPGLLQLPPSQQQVAPQAQSTAVLELLNRMSEVDSDMADITQDGPGESMLRE
EEGESGMGEKGSLLGNVTPSEPDSVSASSQIASSLGINPHTLQIMKASLFAEADDGDMFQ
EQGGMTSSLDVASPRIHLPGTQVRPSIGGLLQTRFSGAGLFQHPDVPSGGGLPGRLSMSR
VSPAVPEPSRVSPWPSFLLLAPPAEATVRTVGARRLGGPVDPENSVTLGKGRLLMDAALF
TGRSFRVGWGPGWTLVHCGDGISGAGDKEQDHGDTGAAGFGFLPKLAKSRLLSDSPFKVV
IEQVVGLEPRNSEESQAVYQRPLEISLKHSSISTEGACPFIQPQSGVAALHEYAEWITDL
NQEAGDAVLGHWAQVWTLCEALWGRRCSAGPGTSGYLQQMERRRSFSAWLSHSATQRIEQ
EVGLNQGGGNVEAIFSYLTGHRISDACRLAQKSGDHRLSLLLSQAVGSQYGRELLALQLG
DWNRMQTDSFLLEERLRIFALLAGKPVWQSTDCVVNVCSELDWKRCMAVHLWYMLPPTAS
IAEALVKYEAAFQGSAEGQKYACAPLPPYLDQSHQPDMEEEESKRPLYDICFHLLKLYSD
RHYSLQQLLDPLAVTWDRLDYRLSWHLWSVLQALHYTHLSPARQDLIHTSYAAQLESAGL
WDMAIYVLLHIPDNTLRERAVREMLRLHCPLLETEESAKKEHFLTERLLIPEQWLHQAKA
TRARRDTDRHGEALHLYRAGHWNLCHSLVMQHLASDCIINDNHEYLLKFLEGLAVPECRA
VIQDWDTAGRVYLDYIRVVQTLHAIQQMDSTGYELECLHTEVKSLCSRIELLPCSTAKDR
LAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLASNIGRLPMPEDYALEELRSLTQSYL
RQLIVS
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgtttggtgctccctttggaggagggactggaggatttgggacgtca
tccacatttgggcaacaaaacactagctttggggcggcaacaggtggcttcggagcctca
gcgtttggggcgaccaacaacactggaggactctttggggcaacgcagaataaaccagtg
gtgacagccaatcctcagcaaatccacactggtgcaggtagaggaggtggcctatttggt
tccagtaccttcagccagcctgtgacatcatccaccagtagcggctttggctttggcgcg
cccagcggcacctccaccagcctgttcggcagcaccagcacgggcggcagcggaggactc
ttctcccagcagagcaatgcatttggcgccgccaaaccagcctcttttggcacgttcggt
acgagcacggccagcagtggggggctgtttggggcaaccaactccaaccctttcggaggg
gcgtctacctccctgttcggagcatcagggtttacccagcaggctgcccagccaggcacc
accgtcaagttcaaccctccaacaggaagtgataccatggtgaaagggggtgtgacgaca
agcatcaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactg
gaggagctgaggtttgaggactaccaggcagggaggaagggacccactaaccctatggct
gcaccaacaggtggtctctttgggcctgcagccgcagccacccccagtacggggactaca
gggctgtttggctcctcagccactaacacaggcttctccttcggccaggccaaaacctcc
ttcggaactagtgcgggtgggtttggtgcagccacaggcagtctgtttgggcagcagcag
ccccagcaggtccagcaggcagtcagcctgttcaagcccttcggccaggtcacgaccacc
cccaacacaggcttctccttcggcagcaccatgggccagccccaacaaaccagcaccatg
gggggtctgtttggggccacggcagcgtcccaggcaggggggttgtttggaaacactgct
cagaccgcaccagctacgggctttgggacaggcactggactctttggacaaaccaacact
gctttcggcaacgtcggcacacagggcttgtttggtaataaaacggcagggtttggtgtc
accaccaccagcgccccatcgtttggcacgggcaccggccttttcggcaacaaacctacc
ctctctctcggaacagctaccaacacatccaactttggttttggacccactgctgctggt
ggaagcctttttgggaacaagactgcagcaggaggactagggatgggagccagctttgga
gcagttggcactggtcagatgtctctgtttgggaataacaagacactgggttccactctg
ggaacaatgggaggttttggtgtgcagggattcagcacaggaaacagcactctgggcttc
ggagcgccacaacagcccgttgcgatgacggaccctaacgcggtggcggcccagcaggca
gtgctgcagcagcagatcaatgctctggcctactcccccttcggagactcccccctcttc
agaaaccccctctctgatgccaagaagaaggaggagcgtctgaagcccactaatccggtg
gcccagaaggcgttgaccacaccaacccactacaaactgacaccgcgacctgcgacacgt
gttcggcccaaagctctgacatcatcgggctcctccaagtcccagctgtttgatgggttg
gatgacgacgagccttccctcaccaacggtgcctttatgcccaggaagagcatcaagaag
ctggtgctgaagaacctgaatggcagcagcctgtacagcagcccaatcaacagagactcc
gacgacctgtcttctccaccagagtaccccctcaacggactcggtgccagtgtggatgag
gatgatgatgatgtgagggaggtggtggagggaggagctgagaacgacctggagaccaag
ttctacgccaagcctaacctacaggacaccatctcagagctcaatgggatgggggctggg
ggcaggaacgggcttgaggtgagcagcgaggacgtatcgctgggagatgactcaatacag
gaggagcgagtggagggccccccccaccctgcaggtatcgttctgggccgtgtgggctac
tacaccatccctgccatggacgagctggcaaaaatggtggacgaaaacggggtgtgtgtg
gtggaaaacttcaccgtgggcagaaaaggttacggctctgtgttcttccatggtgaggtg
aacgtgactgggctgaacctggatgagattgtccacttcaggcgtaaagaggtcattgtc
taccttgacgacaagaacaagcccgctgagggggaggggctcaacaggcgagcagaggtg
actctggatggggtgtggcctaatgataagaccacctgtactcaaataaagagccgtgag
cgtctgtctgagatgaactatgagggccgcctggagaatgcctcacgcaaacagggcgcc
cgcttcctcgagtaccgctcggagacggggtcctgggtgtttgaggtggcccatttctct
aagtacggcctacaggactctgacgaggatgaggaagtccctctcaaattggaccccaag
aagctgaagacagcaacaagacttccaccagggctgctgcagctgcctccctcccagcag
caggtggcaccacaggctcagtccacagcagtgttggagctgctgaatcgcatgtcggag
gtggacagtgatatggccgacattacccaggatggcccaggggagagcatgttgcgggag
gaggaaggggagagtggcatgggggagaagggaagtctgctgggtaatgtgaccccttcg
gaacctgactctgtctcagcgtccagtcagatcgcctcctcgctggggatcaaccctcac
acactacagattatgaaggcatccctgtttgctgaggccgatgatggtgacatgttccag
gagcagggagggatgacaagttctctagatgtggcctctcctcgcatccacctgcctggc
acgcaggtcaggccctccatcggtggtctcctgcagactcgtttcagcggtgccggtctc
tttcagcaccctgacgtgccctccggtgggggccttcccggcaggctgtccatgtctcgg
gtgtcgccggcggtgcctgagccttcacgggtctccccctggccctcttttcttttgctt
gccccaccagccgaggccactgtacggacagtaggggctcggcgcctggggggacctgtg
gacccagagaactcagtcacacttgggaagggccgtcttctgatggatgcggctttgttc
acgggccggtcatttcgggtgggctggggtcctggctggactctggtccactgtggagac
gggataagtggggccggggacaaggagcaggaccacggagacacaggagctgcaggcttt
ggattcctgcccaaacttgccaagagtagactactgtcagacagtccattcaaggtggtg
attgagcaggtggttggtctggagccgaggaacagtgaggagagccaagcggtgtaccag
cggcccctggagatcagcctgaagcacagcagcatcagtacagagggggcctgccccttc
atccaaccccagagtggtgtggccgccctgcacgagtacgcagagtggattactgacctc
aaccaggaggctggagatgcagtcctgggtcactgggcacaggtgtggacactgtgtgag
gccctgtggggccgacggtgttcggcagggcctggtaccagtggctacctgcagcagatg
gagaggagaaggagcttctcagcctggctgtcccacagtgccacccagaggatcgagcag
gaagtgggcctgaaccaggggggaggaaatgtggaggccatctttagctacctgactgga
caccggatcagtgacgcctgcaggctggctcagaagagtggggaccaccgtctctccctg
ctgctgtcccaggcagtgggctctcagtacggccgggagctgctggcactgcagcttgga
gactggaacaggatgcagacagactctttcctgctggaggagaggctacggatctttgcc
cttctcgctgggaaacctgtgtggcagtctacagactgtgtggtgaatgtgtgttcagaa
ctggactggaagcgttgtatggcggtccacctgtggtacatgctgcctcccaccgcctcc
attgctgaagccctggtgaagtacgaggctgccttccagggctctgctgagggtcagaag
tatgcctgcgccccccttcccccctacctcgaccaatcacaccagccggacatggaggag
gaagagtctaaacggccgctttacgatatctgcttccacctgctcaaactctacagcgac
aggcactacagcctgcagcagttgttggaccccctggcggtgacgtgggatcgtcttgac
taccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactacacacacctcagc
ccggcccgacaggacctcatacacaccagctatgctgcccaactggagagtgctggcctc
tgggacatggccatctacgtactgctgcacatacctgacaacacgctgcgtgagcgggcg
gtgagggagatgctgcggctgcactgccccctgctggagactgaggagtctgccaagaaa
gagcactttctcacagagagactcctgatcccagaacagtggctccaccaggccaaagct
accagagccagaagagacacagaccgacacggagaggcccttcacctgtacagagcagga
cactggaacctctgccacagtctggtcatgcagcaccttgcctcagattgcatcattaat
gataatcatgagtacctcttgaagttcctggaggggcttgcagttcctgagtgccgtgct
gtgatccaggactgggacacggcgggcagagtctacctggactacatcagagtcgtacag
accctacacgccatacaacagatggacagtactggttatgagctggagtgtctacacact
gaggtgaagtcactctgcagcaggatagagctcctcccttgctccaccgccaaggaccgc
ctcgcccaatcagagatggccaagcgtgtggctaacatcctccgtgtggtgttgagtctg
cagcagggtggtgagggtggcgagatccccttgtcccagcttgcgtccaacatcggccgt
ctgcccatgcccgaggactatgctcttgaggagctccgcagtctcacccaatcatatctg
agacagctcattgtcagctaa
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