Oncorhynchus keta (chum salmon): 118390340
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Entry
118390340 CDS
T09424
Name
(RefSeq) transcription intermediary factor 1-alpha-like isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
oke01001
]
118390340
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oke04121
]
118390340
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118390340
Protein kinases [BR:
oke01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
118390340
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
118390340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
Bromodomain
ANCHR-like_BBOX
PHD
zf-RING_UBOX
PHD-1st_NSD
zf-RING_5
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
118390340
NCBI-ProteinID:
XP_035636690
LinkDB
All DBs
Position
26:complement(33120491..33138711)
Genome browser
AA seq
997 aa
AA seq
DB search
MDEGAESDDAVIIVENEAESMPVQENTNACNERTGTLNFLDTCPVCHLNFHCREPKLLPC
LHSFCKKCLPSASRNLAMPDTNSSTKPLNVIRCPVCRQECMEVDVMENFFVRDSVEASSS
TVERTVQLCMSCEDNTETTGFCVDCVEFMCATCVEAHQRVKFTKDHTIRQKGDVSQEYVG
VSSHRPVFCEVHKQEPLKLFCETCDLPTCRDCQLLKHKDHNYQFLEDAYKNHKHYMEDMN
RQLLEKKKIIEDVSNSINNGLLQVDENRISVHNEIKKSICSLILEINRKGKILVNQLEGL
TKDHESGLKKQKEDIGYLSRHLDHVINFTKWATARNGGTALLYCKRLILFQIGNLLRAKC
NTSFVPQSTVRFQCRSGFWSSNVDLGSLVVENVPGPQLGSFQGIPHQLPHPGQGPSGSPN
SLPPGLSQPRLAPHNHNTLAQLQMQVEKLAQQPHWQPQTPPWAWYQSMRLQRPPPGPLQG
GSPSQSLPPMPQQGRRFIAPPAIHLSPTSTLSSPGYPPQAVQSLRGLVSSPSSYALKHMD
LFNPMPHFSHNAPLSSNGSLSSPHLRQQQMESAYHNKHPGGPVQIIRPNFPQTLPASLPY
RTAQGHHHAGLTAISCEEKPGTVSWKPLEAQQKAYGAGGSAAKRRRRASPGPIIIIKDEP
EDDISCVQGNLRANLPDSSTGVQAQTCRQDGGEPQVQISRQTTEEEAQAPPQPPGPSGDL
SQAPQQSHSLGAEQQLGSQGPAPEEDPNEDWCAVCQNGGELLLCCDKCPKVFHLSCHIPT
LFRLPSGEWFCSFCRDLSVPEVVYDCDISRLEPRTVKEEPDSEGGFCPVDKRKCERLLLK
MYCSELSADFQEARSPLILPENQETQKTPMVLSIVKSKLESRQSPCYQTPSEVVSDIRLI
FRNCAAFNEADTEVATAGRNLERFFEEQLKFLYPERIFPKVKSEVISSVTPPVSPAPPTN
PDEESSQHAKHQRRSSETQELCTPAQLSSPKGEEEAV
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaggtgcagagtccgatgatgctgtcattattgtggagaacgaagcagagagc
atgccagttcaggagaacacgaacgcctgcaacgagcggacaggcaccttgaattttctg
gacacttgtcccgtgtgtcatttaaactttcattgtcgagaaccaaaacttctgccatgt
ctccactctttttgtaagaagtgtttgccgtcggcttccaggaatttggccatgccagac
actaacagctcgacgaaaccactgaatgtgattcgctgtccggtgtgcagacaggagtgt
atggaggtggacgtgatggagaacttctttgtgagggactcagtggaggcttccagcagc
accgtggagaggactgttcagctatgtatgagttgtgaggacaacacagagactacaggt
ttctgtgtggactgtgtggagttcatgtgtgccacctgcgtggaggcccaccagagggtc
aagttcaccaaagaccacaccatcagacagaagggggatgtatctcaagagtatgtgggt
gtttccagtcataggccagtgttctgtgaagtccacaagcaggagcccctgaagctgttc
tgtgaaacctgtgatctaccaacctgtcgagactgtcagctgctcaagcacaaggaccac
aattaccagtttctggaggatgcctataagaatcacaaacattacatggaggatatgaat
cgtcaactgctggaaaaaaagaagatcattgaagatgtgtcaaactctataaacaatgga
ctccttcaagttgatgagaaccgcatatcagttcacaatgaaatcaagaagtccatctgt
agtctgatactagagatcaacagaaagggaaagattcttgtcaatcagcttgagggcctg
acaaaggatcatgagagtggtctaaagaagcagaaggaggatattggctatctgtccaga
cacctggatcacgtgatcaacttcacaaaatgggcgacagctaggaacggcggcacagct
ctcctgtactgcaaacgtttgattctgtttcagatcggaaacctcctgcgggctaaatgc
aatacctcgtttgtaccgcagagcactgtgcgtttccagtgtcggtcaggcttctggtct
tcaaatgtcgatctgggctcattagtggtggagaatgtcccaggcccccagctgggcagc
ttccagggcatccctcatcaactcccccatcctgggcagggcccctcaggctcccccaac
agcctgcccccaggcctctcccagccccgcctggccccccacaaccacaacaccctggct
cagctccagatgcaggtggagaaactagcccaacagcctcactggcagccccagacccca
ccctgggcctggtaccagagcatgcggctccagagaccccctccagggcccctccagggt
ggctctccctcccagagtctcccccccatgccccagcagggccggaggttcattgccccc
cctgcaatccatctcagtcccaccagcaccctgtcaagtcctggatatcctccccaggct
gtccaatcactgagaggcctggtgagcagccccagcagctatgcactcaaacacatggac
ttattcaacccaatgcctcacttctcccacaatgcaccactgtctagcaacggcagcctc
agttctcctcacttgcgacagcaacagatggagtctgcatatcacaacaagcaccctgga
ggccctgtccaaataataagacccaacttccctcagaccctaccagcttccctcccatat
agaactgcacaaggacaccatcatgcaggactaactgctatatcctgtgaagagaaacca
gggactgtttcctggaaacctctggaggcacagcagaaggcgtatggagctgggggatca
gctgccaagaggagacgaagggcatcgcctggacccatcatcatcatcaaagacgagcca
gaggacgacatcagctgtgtacagggtaacctgagagccaacctcccagacagtagcacg
ggggtccaggcccaaacctgtcggcaagatggaggggaaccacaagtccagatttctcgt
cagaccacagaggaagaggcccaggccccaccacagcctccagggccttcaggggacctg
agtcaagccccacagcagagccactctctgggggcagagcagcagctaggcagtcagggc
ccagctccagaagaggaccctaatgaggattggtgtgctgtgtgtcagaatggaggagag
ctgctgctgtgttgtgacaagtgtcccaaagtgttccacctctcttgccacatccccacc
ctcttcagattacccagtggggagtggttctgctcattctgccgtgacctgtcagtgcct
gaggtggtgtatgactgtgacatcagcagattagagcccagaacagtgaaggaggaacca
gactctgagggaggattctgccctgtggacaaacggaaatgtgagcgactgttgctgaag
atgtactgcagtgagctcagtgctgacttccaggaggctagatcccccttgatattgcca
gagaaccaggagacccaaaagacgccgatggttctgtccattgtgaagagcaagctggaa
tccaggcagagcccctgctaccagacaccttctgaggttgtatcagacatccgactcatc
ttcaggaactgtgcagcattcaatgaggctgacactgaggttgccactgcagggagaaac
ctggagaggttctttgaggagcagttgaagttcctctaccctgaacggatttttccaaag
gtcaagtctgaggtcatcagttctgtgacccctcccgtctctcctgcccctcccacaaac
cctgatgaggagagctcccagcatgcaaagcatcagcgcaggtcctctgagacccaggag
ttgtgtactcctgctcagctaagctcaccaaagggagaggaagaggccgtataa
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