Oncorhynchus keta (chum salmon): 118390567
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Entry
118390567 CDS
T09424
Name
(RefSeq) collagen alpha-1(XXIII) chain
KO
K24355
collagen type XXIII alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118390567
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118390567
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118390567
NCBI-ProteinID:
XP_052313404
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Position
11:51980186..52017772
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AA seq
368 aa
AA seq
DB search
MDGKPGAPGPMGSQGLFGPKGDKGDQGQAGPPGPPGPPGSPGLRGPSGNTGKDGPRGHLG
EQGQMGPPGRQGEDGQHGMLGPQGPPGLKGEPGHAGDQGRSGLDGLPGMKGEKGDTGDTG
PQGDTGLPGEKAVLDSYDIGLGHVFQGPPGPPGPPGGQGPKGESGSHGAPGADGDRGAKG
ERGDDGMPGVAGEKGERDLTGLTGLVGADSKKGARGDSRFEDNLAQIISIAGPPGPPGPP
GLQGFMGHHGMPGPKGEPGDIVSGEKGDAGDRGPPGLRGIQGLPGSTGLVGLPGTIGRKG
EQGLPGLDGFPGLMGEKGERGDRGDKGDRGMLGKKGLKGQKGEEGPPGLDQPCPVGRDGL
PIPGCSQK
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atggatgggaagcctggtgctcctggtcccatgggaagccagggactgtttgggccaaaa
ggagacaagggtgatcagggtcaggctggccctcccggccccccggggccccctggctca
cctggcctcagaggaccatctgggaacacagggaaggatgggcccagaggtcaccttggg
gagcagggacaaatgggtcctcctggacgacagggtgaggatggacagcacggcatgctt
ggaccacaggggcctccagggctaaagggggaaccggggcatgctggcgaccagggcagg
agtggccttgatggactaccagggatgaagggggagaagggggacacaggagacacaggg
cctcagggggacacgggcttacccggagagaaggctgttcttgactcctatgacatcggc
cttggccatgtttttcagggccccccaggcccaccagggccaccaggaggacaagggcca
aagggagaatcaggctcacatggtgcacctggagctgatggggataggggagccaaaggg
gagagaggtgatgacgggatgcctggagtggcaggggaaaagggagagagagatctgacg
ggcctaactgggcttgtgggagctgacagcaaaaaaggagcgagaggagattcaaggttt
gaggacaatctggcccagatcatctcgatcgcaggccctccagggccccccggacctcct
gggctccaaggattcatgggacatcatggaatgcctggccccaagggggaaccaggcgac
atagtgagcggagaaaagggggatgcaggagacagaggacctccggggttaaggggtatt
cagggtcttccaggttctacaggattggttggtctccctggcaccatagggagaaaggga
gagcaaggattgccgggattggatggtttccccgggctgatgggagaaaagggggagaga
ggggaccgaggagataagggtgacagggggatgctgggaaagaagggactgaagggacag
aagggcgaggagggcccccctggactggaccagccctgtcctgtgggtcgggatggattg
cccataccagggtgttcgcaaaagtga
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