Oncorhynchus keta (chum salmon): 118390583
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Entry
118390583 CDS
T09424
Name
(RefSeq) transcription factor Sox-19a-like isoform X1
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118390583
Transcription factors [BR:
oke03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118390583
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
HTH_24
Motif
Other DBs
NCBI-GeneID:
118390583
NCBI-ProteinID:
XP_035637172
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Position
11:52521609..52524092
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AA seq
322 aa
AA seq
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MVNMYNIIEHQLKSSVPSHHPGTGMPPANGVGGHEGGHTGSKLPTIQPDPMDKVKRPMNA
FMVWSRGERRKMAQENPKMHNSEISKRLGVAWKSLTDAEKRPFIDEAKRLRAVHMKDYPD
YKYKPRRKTKPMPKNNTLAAQYQMSAGNHLLSASAAQGQVGNPRMDAYGWGHTGGYTAAM
QSEALGYSQQLHRYDLSALQYQSSMAQAQAYMNGANAYSPMSYNSSPQQVSPVMSMVKQQ
SDGHSMSPSPTGPHSPLQQHHHQAHQQHQTQRGIQVQGDHLRDMISMYMPGGDASEAQRG
YSVSAANIQQHYLGGSAPLTHL
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatatgtataacattatagagcaccaactcaagtcctctgttccttcacatcat
cctggaacaggaatgccacctgcgaacggagtaggggggcacgagggcggccacacaggt
tccaaattaccgacaatccaacctgacccaatggacaaagtcaagcggcccatgaatgcc
ttcatggtctggtctcgcggtgagcgacggaaaatggctcaggaaaatcccaaaatgcac
aattctgagatatccaaacggctgggtgtcgcgtggaagtctctaacagacgccgagaaa
aggcccttcattgacgaggctaagcgcctccgcgcggtgcacatgaaggattatccggac
tataaatacaagccccgtcgtaaaaccaaaccgatgccgaagaacaatactctcgccgcc
cagtatcagatgtcggccggtaaccacctgctgagtgcgtccgcggctcagggacaagtt
ggaaaccccagaatggacgcatatggctggggccacacagggggctacactgcggcgatg
cagagcgaggcgctcggctacagccagcagcttcaccgctatgacctgtcagcacttcag
tatcagtccagcatggcccaggcccaagcctacatgaatggtgccaacgcatacagcccc
atgtcctacaacagcagcccccagcaggtcagcccagtgatgtccatggtgaagcagcag
tctgatggccacagcatgtccccatcccccaccgggccccacagccccctgcagcagcac
caccaccaggcccaccagcagcaccagacccagcgtggtatccaggtccagggagaccat
ctcagggacatgatcagcatgtacatgcctgggggagatgcctcagaggcccagagaggg
tactccgtctctgcagcaaacatccagcagcattacctgggagggtcagctccactcacc
cacctttga
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