Oncorhynchus keta (chum salmon): 118390985
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Entry
118390985 CDS
T09424
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04140
Autophagy - animal
oke04148
Efferocytosis
oke05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118390985 (vps11)
04148 Efferocytosis
118390985 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
118390985 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118390985 (vps11)
Membrane trafficking [BR:
oke04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
118390985 (vps11)
Hops complex
118390985 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
TPR_Vps41
Clathrin
zf-C3HC4_2
zf-rbx1
zf-RING_2
zf-C3H2C3
zf-C3HC4
TPR_GEMI5
Beta-prop_EML_2
WD40_CDC20-Fz
zf-RING_5
zf-ANAPC11
ToxA_N
zf-RING-like
Kbp-5
DLP_helical
DivIC
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
118390985
NCBI-ProteinID:
XP_052313695
LinkDB
All DBs
Position
12:complement(11489323..11512103)
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AA seq
929 aa
AA seq
DB search
MAAFLQWRRFVFFDKETVKDAGDNGKNFVLPVGISACDSGRGHIVLGDMDGQIWFLTRSL
QLSSFQAYKLRVTHLYQLKQHSILVTVGQDEQGINPLVKVWNPDKRDSGNPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGTCPITGLAFR
QQNKVTHLFVATLEKVHCYTLSVKEYPKLELDTHGCALRCSALTDPSQDSQFIVAGDECV
YLYQPDERGPCFAFDGHKLLAHWHRGYLLLLTRDTKSPNKSEFGSRETSPSEKQILTIYD
LDNKFIAYSASFDDIIDVLAEWGSFYILTRDGKMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRQYGDHLYVKGDHDGAIQQYIRTIRKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQA
GYHSHAVFLAERHQHHKWYLKIQLEDLKNYQEALRYIGRLPFDQAESNMKRYGKTLMHHV
PDGTTLLLKGLCTDYQPSRDAMERDSLDRGPAVAKKANSEEFISVFANNPRELRAFLEHM
IEVEPFSSQGVYDTLLELRLQDWAHEQDSERKKVLQGAALSLLRSDNTVFDKALVLCQMH
NFKEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDQEVCLWEQALGYFARKEED
CKAYISQVLEHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESQQIEDDERKI
RQYREETAHLRAEIQELRSSAKIFQKTKCSMCNSPLELPSVHFLCSHSFHQHCFESYAES
EAECPTCTPENRKVMDMLRAQDQKRDLHDHFTRQLRCSNDGFSVVADYFGRGVFNKLTLV
TDPPGSKVGVGSLEADLQRDLLIHTKRNT
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgttcttacagtggagacgatttgtgttttttgataaagagaccgtgaaggac
gctggagataatgggaagaactttgtcctcccggttggcatatctgcatgtgactcgggc
cgaggccacatcgttcttggagatatggacggtcagatctggtttttgacacgctcccta
cagttgtcctcctttcaggcttacaagctgagagtgacccacctgtaccagctcaaacaa
cacagcattttggtcacggttgggcaggacgagcaaggaattaaccccctggtgaaggta
tggaatccggacaagcgtgacagcgggaatcctctgtgtaccagaatattcccagcaatt
cctgggaacaaaccgacagaggtgtcctgcctcagtgtacacgagaacctaaactttatg
gctattggcttcacagatggcagtgtggtgttgacaaagggtgacataacccgggacagg
cacagtaaaaccctgacactgcatgagggcacctgtccaatcacaggcctcgcttttcgt
cagcagaacaaagtcactcacttatttgttgccactctggaaaaagtccattgctacact
ttgtcggtgaaggagtaccctaaactggaactggacacccacggctgtgcgctgcgttgc
tctgcactcacagacccctcccaggactcccagtttattgtcgcgggggatgagtgtgtg
tacctttaccagcctgatgaacgggggccctgtttcgctttcgatgggcacaagctactg
gcccactggcaccggggctacctcctgctgctcaccagggacaccaagtctcccaacaag
tctgaatttgggagtagagagacatctccttcggagaaacaaatcttgacaatctacgac
ctggacaacaagttcattgcctacagcgcttcctttgatgacatcattgacgtcctggct
gaatggggctccttctacatcctgactcgggatggaaaaatgtttgtgctgcaggagaaa
gacactcagaccaagctagagatgctcttcaagaagaatctgtttgtgatggccatcaac
ctggctaagagccagcacttggacagtgacgggctgtctgagattttcaggcagtacggt
gaccacctctacgtgaagggtgaccacgatggagccatccaacagtacatccgcacaatc
aggaagctggagccttcttacgtaatccggaagtttctggatgctcagaggatccacaac
ctgacggcctacctccaggccctgcaccggcagtcgctggccaatgccgaccacaccacc
ctgctgctcaactgctacaccaagctcaaggacagctctaagcttgaagagttcatcaag
agcagcgagagcgaggtccacttcgacgtggagattgcaatcaaggtgctgcgccaggca
ggctaccacagtcacgcagtcttcctggccgagaggcaccagcaccacaagtggtacctg
aagatccagcttgaggacctgaagaactaccaggaggctttgcgttacattggacgactt
cctttcgaccaggcagagagcaacatgaaacgctacggcaagaccctgatgcaccacgtc
cccgatggcaccacactgcttctcaagggcctgtgtaccgactaccagcccagccgggat
gccatggaaagagacagcctggacagaggcccggcggtggccaagaaggcaaattcagag
gagttcatctctgtgtttgctaataacccgcgggagctaagggccttcctggagcacatg
attgaggtggagcccttctcctctcagggggtgtatgacacactgctagaactacggctg
caggactgggcacatgaacaagactctgagaggaagaaggtcctgcagggggcagcattg
tccttgctgaggagcgacaacaccgtatttgacaaggccctcgtcctgtgccagatgcac
aacttcaaagaaggggtcctatacctctatgagaagggcaaactgtaccaacagatcatg
cactaccacatgcagaatgaggagtatggcaaagtggtggaggcctgcaagcgctacggt
gaccaggaagtatgcttgtgggagcaggcgctgggatactttgcccgcaaagaggaggac
tgcaaggcctacatcagccaagtcctggagcacatcgaccagaacaacctgatgcctccc
ctattggtggtgcagacgctggcacacaactccacagccacgctgtcggtcatcaaggac
tacctgatcaacaagctgcagagggagagccagcagattgaggacgatgagcgcaagatc
cgccagtaccgcgaggagacggcccacctccgcgccgagatccaggaactcagaagcagc
gcaaagattttccagaagaccaagtgcagcatgtgcaacagccccctcgagctgccctct
gttcactttctgtgcagtcactccttccaccagcactgctttgagagctacgcagagagt
gaggccgagtgtcccacctgcacaccggaaaaccggaaggtcatggacatgctgcgggcc
caggaccagaaacgagacctgcacgaccacttcaccagacagctgcggtgctccaatgat
ggtttctccgtggtggcggactactttggccgtggggtgttcaacaagctgaccctggtc
accgacccgccgggcagcaaggtgggggtgggaagcctggaggcagacctgcagagggac
ctactcatccacaccaagaggaacacttga
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integrated database retrieval system
