Oncorhynchus keta (chum salmon): 118391089
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Entry
118391089 CDS
T09424
Symbol
nup88
Name
(RefSeq) nucleoporin 88
KO
K14318
nuclear pore complex protein Nup88
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118391089 (nup88)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118391089 (nup88)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118391089 (nup88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
Fib_alpha
Motif
Other DBs
NCBI-GeneID:
118391089
NCBI-ProteinID:
XP_035637992
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All DBs
Position
12:19897152..19914940
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AA seq
720 aa
AA seq
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MAAFAGERWRSELPSHYIFFKLREKLDLEPKANCRKTAKNLTFCLNGDIFVWNDADSVFY
TTNLRQLNSEDSIESVKYQTLLCINPPRFEVCQVLLSPTQYHVALIGQRGVTVLELPQRW
GKRSEFEGGRSEVNCKTIPVAERFFTSSASVTLRQAAWFPSETEEPHLVLLTSDNTIRFY
GLKEPQTPARALSVSQSEEDSSVHTRGRSYAASLGEIAVAFDFGPVAGAPQQLTGQRSKE
DVLVYPLYILYENGETYLSYTSLAHSLGSLSKPIGPLPMYPAAEDNYGYDACAVLCLPCV
PNILVIATETGTLYHCVVLEAEEEEETGAVERWLRGSEAVPSLYVFECVELELTLKLPAG
EEEEPVESDFTCPIRLHRDPLCQHRYHCTHEAGVHSVGLTWFNKLHKFLQSDEDKDSLQE
LAAEHRCIVEHILCTRPLSSSLSAPVRGFLIVSDLSLGATMICITSTYECLLLPLLSSIR
PPSPPLLCSHPGVGSASSPLRGLHDDSFEQHIRNILARSSTNPLMLRAGDKDTSSPPPEC
LQLLSRATQVFREEYILKQDIAREEMQRRVKLLTGQKNKQLEDLALCREERKSLRESAEL
LADKYEDAKYRQEATMNRVKQVLGSLRSQLPVLSDSEKDMKKELQTINDQLRHLGNGIKQ
VNMKKEYQKKQMDKGLSPARATVALNPHQRKCVQGVIKEQGEHIGEMMKQIKDIKNHFSV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtttgctggcgagcgatggagaagcgagctaccaagtcattatatatttttt
aaattacgagagaaacttgatttggaacccaaagcgaattgcaggaaaactgcaaagaat
ctgacattttgcctcaatggtgacatattcgtgtggaacgacgcagacagtgttttttac
acgactaacctgaggcagctgaattcggaggacagcattgagagtgtgaaatatcagact
ctgttgtgcatcaatccaccacggtttgaagtgtgccaggtgttgctgagcccgacacag
taccatgttgcactcattggacaacggggtgtcaccgttctagaattaccacagaggtgg
ggcaagaggtccgagtttgaaggaggacggagtgaagttaactgcaagactattcctgtg
gctgagcgtttcttcaccagctcagcctccgtgaccctgcggcaggccgcctggttcccc
agtgagacggaggagccccacctagtgctactgacctctgacaacaccatcaggttctac
gggttgaaagagcctcagactcccgctagagcactatcagtttcccagtcagaggaggac
agcagtgtacacactcgtgggcgctcctatgcagcctctctgggtgagatcgctgtggct
tttgactttgggccagtggccggcgcccctcaacagctcacaggccagcggtccaaggag
gatgtgctggtgtaccccctctacatcctctacgagaacggagagacctatctgagttac
accagcctcgcacacagtttgggaagcctcagtaagcccattgggcccttacccatgtac
cccgcggcggaggataactatggttatgacgcctgtgccgtgctctgcctgccctgtgtt
cccaatatcctggtcatcgccacagaaacaggcacactgtaccattgcgtggtgctggaa
gcagaggaggaggaggagactggagcagtggagcggtggttgcggggctcggaggcagtg
ccctctctctacgtgtttgagtgtgtggagctggagctcaccctcaaactgcccgcaggg
gaggaggaagagcctgtggagtccgacttcacttgcccaatccgactgcacagagacccc
ctgtgccagcacagataccactgcacacatgaggcaggagtgcacagtgtaggcctcact
tggttcaacaaactacacaagttcctccagtcagatgaggacaaggatagtctccaggag
ctggctgctgagcaccgctgcatcgtagagcacattctctgtaccaggcctctaagtagc
agcttgtcagctccagtacggggcttcttgatcgtgtcagacctgtctttgggtgcaacc
atgatctgcattaccagcacctatgagtgtctactactgcctctcctgagttccattcgg
cctccctctcctcccctgctgtgttcccacccgggggtaggctcagctagctctcctctg
cgtggattgcatgacgactcctttgagcagcacatccgcaacatcctggcccggagctcc
accaaccctctcatgctcagggcaggggacaaggacacatcgtctcctcctccagagtgt
ctccagctgctgagcagagccacccaggttttcagggaggagtacatcctcaaacaggac
attgcccgtgaggagatgcaaagaagggtgaaactgctgaccggacagaagaacaagcag
ctggaggacctagccctgtgccgagaggaaaggaaaagtctgcgagagtctgcagagctt
ctggctgataagtacgaggatgccaagtatcgccaggaagccaccatgaacagggtgaag
caggttctgggcagtctgcgcagtcagctgcccgttctgtctgacagcgagaaggacatg
aagaaagagctgcagaccatcaacgaccagctgcgtcacctgggcaatggcattaaacaa
gtaaatatgaagaaggagtaccagaagaaacagatggacaaagggctgtctccagccaga
gctactgtcgccctcaacccccaccagaggaagtgtgtccagggagtgataaaggaacag
ggagagcacataggagaaatgatgaaacagatcaaggacatcaagaaccatttcagtgtc
tga
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