Oncorhynchus keta (chum salmon): 118391106
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Entry
118391106 CDS
T09424
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
118391106 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118391106 (rabgef1)
Membrane trafficking [BR:
oke04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
118391106 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
118391106 (rabgef1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Tautomerase_3
CID_GANP
DUF2336
Motif
Other DBs
NCBI-GeneID:
118391106
NCBI-ProteinID:
XP_035638024
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Position
12:complement(20516179..20551661)
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AA seq
535 aa
AA seq
DB search
MSQRKERRGIHVDQSELHCNKGCGYYGNAAWQGLCSKCWREEYQRARQKQIQEDWALAEK
LQREEEVAYASIQGAQSQPQAQPQASLAPFSKFEEKKTNEKTRKVTTVKKFFSPSSRTAP
KKAPTVGEEKLTGLRDWRGMFTPPWEMGSPTEENQEGKTPSPSISRQSSIETDRVSRDFV
DFLKTLHKPGREVHKQSRAFIEIMANKKDLSADELSECVQDFYQNLSDRLMTHFKGSSER
VERVMDEVEKYIMTRLYKSVFCPETTDDEEKDLATQNRIRALHWVDIQMLCVPVDEEIPE
VSDNVVKAITDVIEMDSKRVPRDKLACITRCSKHIFSAIKITKSEPASADDFLPTLIYIV
LKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLDPEDFER
YMSGQASPRRPEADSGWPQVDPPTGSAASSPALSQVYHNLDLLSGLGSRQDRVLEGVQSL
QRDLITWQESVEREVQEILEKYPLEIRLPTPSAIDSDNVENDRLPPPLTPQVFAG
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggaaggagcgccgcgggatccacgtggaccagtcagagctgcactgcaac
aagggctgcggttactatggcaatgccgcctggcagggcctgtgctccaagtgctggcgg
gaggagtaccagcgggcccggcagaagcagatccaggaggactgggccctagctgagaag
ctgcagagggaggaggaggttgcctatgccagcatccagggggcccagtcccagccccag
gcacaaccccaggcctctctggcgcccttctccaagttcgaggagaagaagaccaatgag
aagacacgcaaggtgaccactgtgaagaagttctttagtccctcgtcacggactgccccc
aagaaagcccccactgtgggagaggagaagctgacaggcctcagggactggagaggaatg
tttactcccccttgggaaatgggctctcccaccgaagagaaccaggagggcaagaccccc
agcccctccatcagccgccaatcaagcattgagacagaccgtgtctccagagactttgtg
gacttcctgaagactctgcataagcctggccgtgaggtccacaagcagagccgagccttc
atcgagatcatggccaacaaaaaggacttgagtgctgacgagctgtcagagtgtgtccaa
gacttctaccagaatttgtctgaccgcctcatgactcattttaaaggctcttcagagcgt
gtggagcgagtgatggacgaggtggagaagtacatcatgacacgcctgtataagagtgtc
ttctgccccgagaccacagacgatgaggagaaagacctggccactcagaaccggatacgg
gcgttacactgggtggacattcagatgctttgtgtgccagtggatgaggagatcccagag
gtttcagacaacgtggtcaaagccataacagatgtcatcgagatggactccaagcgggta
ccccgggacaagctagcgtgcatcacgcgctgcagcaagcacatcttcagcgccatcaag
atcacgaagagcgagccagcctcggccgacgacttcctgcccaccctgatctacatcgtg
ctgaaggccaaccctccacgcctgcaatccaacatccagtacatcacccgcttctgcaac
cccagcaggctcatgactggagaggacggatactacttcactaacctgtgctgtgcagtt
gccttcatcgagaaactggacgcccagtctctcaacttggacccagaggactttgaacgc
tacatgtcgggccaggcctctcctcgcaggcctgaggcagacagcggctggccccaggtg
gaccctcctactggttctgctgcctccagtcccgccctatcccaggtctaccataacctg
gacctcctgtctggcctggggagcagacaggacagggttctggagggggtgcagagcctg
cagagagacctgatcacctggcaggagagtgtggagcgagaggtgcaggagatcctggag
aagtacccgctggagatccgcctgcccaccccctccgccattgactcagacaacgtggaa
aacgaccggctgccaccaccactgacgccccaggtgtttgctgggtaa
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