Oncorhynchus keta (chum salmon): 118391204
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Entry
118391204 CDS
T09424
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118391204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118391204
03036 Chromosome and associated proteins [BR:
oke03036
]
118391204
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118391204
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
118391204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
118391204
NCBI-ProteinID:
XP_035638241
LinkDB
All DBs
Position
12:27602501..27627503
Genome browser
AA seq
1826 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTGFGATSGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGTASGTSTSLFGSTNTGGGGGL
FSQQSNAFGAAKPASFGTFGTSTANTGGLFGATNSNPFGGASASLFGASGFTQQAAQPGT
TVKFNPATGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPMA
APTGGLFGAAAAATPSTGAAGLFGSSATNTGFSFGQAKTNFGTSTGGFGTATGSLFGQQQ
QPQQAQQAASLFKPFGQATTTPNTGFSFGNTSTMGQPQQTSTMGGLFGSTAASQAGGLFG
NAAQTTPATGFGTGTGLFGQTNTAFGNVGTQQSLFGNKTAGFGATTTSASSFGTGTGLFG
NKSALTLGTGTNPSNFGFGPTAAGGSLFGNKTAAGGLGTGLGAGFGAAVGTGQMSLFGNN
KTLGSTLGTIGAFGPQGFSTGTSTLGFGAQQQPVALTDPNAAAAQQAVLQQQINALAYSP
FGDSPLFRNPLSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSK
SQLFDGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDTDDLASPPEYPLNG
LSASVDEDDYVREVVEGGAEDDLEINKFYTKPSLQDTISELNAHRVGARGRNGLEVSSED
ISLGEDSIQEEREEEVQEVPPHPAGIVLCRVGYYTIPAMDELAKMVDENGVCVVENFTVG
RKGYGSVFFHGEVNVTGLNLDEIVHFRRKEVIVYPDDKNKPAEGEGLNRRAEVTLDGVWP
NDKTTCTQIKNPERLSEMNYEGRLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLQDS
DEDEEVPLKVDPKKLKTATTLPPGLQQLPPSQQQVAPQAQSTTVLELLSRMSEADSDMAD
ITQDAPGESMLEEVGESGMGQDKGSRLGTVTPTEHNPVSASSQIASSMGINPHTLQIMKA
SLFAEDDDGDMFLEQGGMKSSLDRASPRILLPGTQGRPSIGGLLQTRFSGAGLFPQLPDV
PFGGGLPGRLSLSRPSAVVPEPSRLSPWPSLGPSFLLPAPAAEATVRTVGARRLGGPVDP
ENSVTLGKGRLLMDAALFTGRSFRVGWGPGWTLVHCGDRLSGAGDKEQDQGDAGGFGFLP
KHAKSKRLSDSPFKVVIEQVVGLEPRDSEESQAVYQRPLEIGLKHSTISTEGACPFIQPQ
SGVAALHEYVEWITDLSQEAGAGDGVLAHWALVWTLCEALWGRLGTTEPEPGTSGYLQQL
ERRRSFSAWLSHSATQRIEQEVGLGHGGGHVEAIFSYLTGHRISDACRLAQKSGDHRLSL
LLSQAVGSQYGRELLALQLGDWNRMQTDSFLQEERLRIFALLAGKPVWQSTDCVVNVCSE
LDWKRCVAVHLWYMLPPTASIADALAKYEAAFQGSAEGQKYACAPLPPYLDQSFPLDMEE
EESKRPLYDICFHLLKLYSDRHYSLQELLDPLTVTWERLDYRLSWHLWSVLQALHYTHLS
PARQGLIHTSYAAQLESAGLWDMAIYVLLHISQDMLRERAVREMLQLHCPLLETEESAQK
ERFLTERLLIPEQWLHLAKATRARREADRHREALHLYRAGHWNLCHRLVIQHLASDCIIN
DNHEYLLEFLEGLAVPERCALIQDWDTAGRVYLDYIRVIQTLHAIQQMDSAGYKLERLHT
EVTSLCSRIELLPCSTAKDRLAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLAPHIGR
LPMPEDYALEELRSLTQSYLRQLIVN
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttggtgctcctttcgggggagggaccggaggatttggaacttca
tccacgtttggacaacaaaacactggctttggggcgacgtcaggtggcttcggggcctca
gcatttggggcgaccaacaacactggaggactctttggtgcgacgcagaataaaccagtg
gtgacagccaatcctcaacaaatccacactggtgcaggtagaggaggtggcctgtttggt
tccagtacgttcagccagcccgtaacgtcgtccaccagtagcggctttgggtttggcacg
gccagcggcacgtccactagcctgttcggcagcaccaacacgggcggcggtggaggactc
ttctcccagcagagcaatgctttcggagccgccaaaccagcctcctttggcacgtttggc
acgagcacggccaacaccggggggctgtttggggcgaccaactccaaccccttcggaggg
gcgtctgcctccctgttcggagcttcagggttcacccagcaagccgctcagccaggcacc
actgtcaagttcaaccctgcaacaggaagtgacaccatggtgaaagggggtgtgaccacg
agcattaacaccaagcaccagtgcatcacggccatgaaggagtacgagaacaagtcactg
gaggagctgaggttggaggactaccaggcaggaaggaagggccccactaaccccatggct
gcaccaacggggggtctctttggggctgcggccgcagccacccccagtacgggggctgca
gggctgtttggctcctcggccaccaacacaggcttttccttcggccaggccaaaaccaac
ttcggcaccagtactggtgggtttggtacagccacaggcagtctgtttggccagcagcaa
cagccccagcaagcccagcaggcagccagcctgttcaagcccttcggtcaggccacaacc
acacccaacacaggattctccttcggcaacaccagcaccatgggccagccccaacaaacc
agcaccatggggggtctgtttgggagcaccgcggcgtcccaggcaggggggttgtttgga
aacgcagctcagaccacaccagccactggctttgggacaggcaccggtctcttcggacaa
accaacaccgccttcgggaacgtcggcacacagcagagcttgtttggtaataagacggca
gggtttggcgccaccaccaccagcgcctcatcgtttggcacaggcaccggcctctttggt
aacaaatccgccctcaccctcggaacaggcaccaacccatctaactttggttttggaccc
actgctgctggcggaagcctctttgggaacaagacggcagcaggaggactggggactgga
ctgggagccggctttggagcagcggtgggcactgggcagatgtctctgtttgggaataac
aagacactgggttccactctgggaacaataggagcgtttggaccgcagggattcagcaca
ggaaccagcactctgggcttcggagcacaacaacagcctgttgcgctgacggaccctaac
gcggcggcggcccagcaggcagtgctgcagcagcagatcaatgctctggcctactccccc
tttggtgactcccccctcttcagaaaccccctctctgaccccaaaaagaaggaggagcgt
ctaaagcccaccaatccggcggcccagaaggcgttgaccacgcccactcactacaagctg
actccgcggcctgcgacacgtgtgcggcccaaagctcttacatcttcgggctcctccaag
tctcagctgtttgacgggctggatgatgacgagccttctctcaccaatggagccttcatg
cccaggaagagcatcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagc
agcccaatcaacagagacacagatgacctggcatctccaccggagtaccccctcaacggg
ctcagtgccagtgtggacgaggatgattatgtgagggaggtggtggagggaggggctgag
gatgacctggagatcaacaagttctacacgaagcccagcctgcaggacaccatctcagag
ctcaatgcccatagggtgggggccaggggcaggaatggcctggaggtgagcagcgaggac
atatcgctgggagaggactccatacaggaggagcgagaggaggaggtgcaggaggttccc
ccacaccctgcaggtatcgttctgtgccgtgtgggctactataccatccccgccatggac
gagctggccaagatggtggacgagaacggcgtgtgtgtggtggagaacttcaccgtgggc
agaaaaggttacggctcagtgtttttccatggcgaggtgaatgtgactgggctgaacctg
gatgagattgttcacttcagacgcaaagaggttatcgtctaccccgacgacaagaacaag
cctgcggagggggaggggctcaacaggcgagcggaggtgactctggatggggtgtggcct
aatgataagaccacttgtactcagataaagaaccctgagcgtctgtctgagatgaactac
gagggccgtctggagaacgcctcacgcaaacagggagcccgcttccttgagtaccgcccc
gagaccggctcctgggtgtttgaagtggcccacttctctaagtatggcctgcaggactct
gatgaggatgaggaagtgcctctcaaagtggaccccaagaagctgaagacggccacaaca
cttcccccggggctgcagcagcttcctccctcccagcagcaggtggcgccacaggctcag
tccacgactgtgctggagctgctgagccgcatgtctgaggcggacagtgacatggccgac
attacccaggatgccccaggggagagcatgttggaggaggttggggagagcggcatgggg
caggataagggcagtcggctgggtactgtgacccccacagaacacaaccctgtctctgca
tccagtcagattgcctcctcgatgggaatcaaccctcacactctccagatcatgaaggca
tctctttttgctgaggatgatgatggtgacatgttccttgagcagggagggatgaagagc
tctctagacagggcctcccctcgcatcctcctgcctggcactcagggcaggccctccatc
ggtggtctcttgcagactcgtttcagcggggcaggtctcttccctcagctccctgacgtg
ccctttggaggaggccttcccgggaggctgtccctgtctcggccgtccgcggtggttcct
gagccctcgcggctctccccctggccctcgctggggccctctttcctgctgccagcccca
gcggcagaggccactgtacggacggtgggggctcgacgcctggggggccctgtggaccca
gagaactcagtcacactggggaagggccgtctgctgatggatgcagctctgttcacgggc
cggtctttccgggttggctggggtccaggctggactctggtccactgtggagacaggctg
agtggggctggggacaaggagcaggaccagggagatgcaggaggttttggatttttgcct
aaacatgccaagagcaaacgactctcagacagtccgttcaaggtggtgatcgagcaggtg
gttggtctggagccgcgggacagtgaggagagccaggcggtgtaccagcggcccctggag
attggcctgaagcacagcaccatcagtacagagggggcctgccccttcatccagccccag
agtggggtggccgccttgcacgagtacgtagagtggatcactgacctcagccaggaggct
ggtgccggagacggggtcctggctcactgggctctggtgtggactctgtgtgaggccctg
tggggtcggctgggtacgacagagccagagcctggtaccagcggctacctgcagcagctg
gagaggaggaggagcttctcagcctggctgtcccacagcgccacccagaggatcgagcag
gaggtgggcctgggccatgggggaggacatgtggaggccatcttcagctacctcactgga
caccgcatcagtgacgcctgcaggctggctcagaagagtggggaccaccgcctctccctg
ctgctgtcccaggcggtgggctctcagtacggccgggagctgctggcgctgcagcttgga
gattggaacagaatgcagacagactcatttctgcaggaggagaggctacgcatcttcgcc
ctgctcgccgggaaacctgtgtggcagtctacagactgtgtggtgaacgtgtgttcagag
ctggactggaagcgttgcgtggcggttcacctgtggtacatgcttcctcccaccgcctcc
atcgctgacgccctggccaagtacgaagcagccttccagggctctgcagagggtcagaag
tacgcctgcgcccccctgcccccctaccttgaccaatcattcccgctggacatggaggaa
gaagagtctaaacggccactctacgacatctgtttccacctgctcaaactatacagcgac
agacactatagcctgcaggagttgttggacccgctgacggtgacgtgggagcgtctggac
taccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactacacacacctgagc
cccgcccgacagggcctcatacacaccagctacgctgcccagctggagagcgctggcctc
tgggacatggccatctatgtactgctgcacatatctcaggacatgctccgtgagcgtgcg
gtgagggagatgctccaactgcactgccctttgctggagacggaggagtctgcccagaaa
gagcgcttcctcacagaaagactactgatcccagaacagtggctccacctggccaaagct
actagagccagaagagaggcagacagacacagagaggccctgcacctgtacagagcaggc
cactggaacctctgccacaggctggtcatacaacacctagcctcagattgtatcattaat
gataaccatgagtacctgttggagttcttggaggggctggctgttccagagcgctgtgct
ctgatccaggactgggacacggcaggcagagtctacctggactacatcagagtcatacag
accttacacgctatacagcagatggatagtgctggttataagctggaacgtctacacacc
gaggtgacatcactctgcagcaggatagagctcctcccctgctccaccgccaaggaccgc
ctcgcccaatcagagatggccaagcgcgtggctaacatcctgcgtgtggtgttgagtctg
cagcagggtggtgagggtggcgagatccccttgtcccagctagcgccccacatcggccgt
ctgcccatgcctgaggactatgccctcgaggagctccgcagcctcacccaatcatacctg
agacagctcattgtcaactaa
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