Oncorhynchus keta (chum salmon): 118391316
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Entry
118391316 CDS
T09424
Symbol
smarca1
Name
(RefSeq) probable global transcription activator SNF2L1
KO
K11727
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1 [EC:5.6.2.-]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118391316 (smarca1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oke03036
]
118391316 (smarca1)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Chromatin remodeling factors
NuRF complex
118391316 (smarca1)
CERF complex
118391316 (smarca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Myb_DNA-binding
CHDII_SANT-like
UBA_2
Motif
Other DBs
NCBI-GeneID:
118391316
NCBI-ProteinID:
XP_035638478
EnsemblRapid:
ENSOKEG00005005706
LinkDB
All DBs
Position
12:complement(31378874..31392828)
Genome browser
AA seq
1014 aa
AA seq
DB search
MSDEEIPSTSREPVPEEEELKPPLKAVPKAEGELDPEYEEKRKTDRANRFEFLLKQTELF
AHFIQPASQKSPTSPLKVKPGRPRVKQDEKLNLLSVGDNRHRRTEQEEDEELLSESRKAA
NVLVRFEESPSYVKNGELRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIALLGYL
KHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPTLKAVCLIGDKDARAAFIRDVMMPGEWDV
CVTSYEMVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQN
NLHELWSLLNFLLPDVFNSANDFDSWFDTNNCLGDQKLVERLHAVLRPFLLRRIKAEVEK
NLPPKKEVKIYLGLSKMQREWYTRILMKDIDILNSSGKTDKMRLLNILMQLRKCCNHPYL
FDGAEPGPPYTTDSHLVTNSGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWR
GYEYCRLDGNTPHEARQDAIEAYNAENSSKFIFMLSTRAGGLGINLATADVVILYDSDWN
PQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEMKLRLDSIVIQQGRLMEQSN
KLGKDEMLQMIRHGATHVFASKDNELTDEDINTILERGAKKTAEMNERMESLGESSLRNF
TVDTGGAETSLYNFEGEDYREKQKLSMMEWIEPPKRERKANYAVDAYFREALRVSEPRAP
KAPRPPKQPNIQDFQFFPPRLFELLEMEILYYRKTIGYKVPRSPDIPNAAQVQKEEQRKI
DEAGPLSPEETEEKEKLLTQGFTSWNKRDFNQFIKANEKYGRDDIDSIARDVEGKNPEEV
IEYSAIFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYG
TNKGKNYTEEEDRFLICMLHKMGFDKENVYEELRQCVRNAPQFRFDWFIKSRTAMELQRR
CNTLISLIEKENMEIEEKERAEKKKRTTKSQMAHKRKADASSEATGRKEKKARA
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgaagagattccttcaacttccagagagcctgtacccgaagaagaagagctg
aagccacctctgaaggctgtgcccaaggcggagggggagttagatccagagtatgaggag
aaaaggaaaacagatagagcaaaccggtttgagtttctgctcaagcaaacagaactcttt
gcccacttcatccagcctgcatctcagaagtctcctacttcacccctgaaagtgaaacct
ggacgacctcgcgttaaacaggatgagaaactaaatctcctctctgttggagataaccgc
caccgacgcacagaacaggaagaagatgaagagttgttatctgagagcaggaaggcagct
aatgtcttggttcgctttgaagagtccccatcctatgtgaaaaatggagagctgagagat
tatcaagtcagaggtctcaactggatgatctccctttatgaaaatggcattaatggaatt
ctggctgacgaaatgggcttagggaagaccctccaaaccattgcattgctgggatacctg
aagcactacaggaacattccaggcccccacatggttctggttcccaaatcaacgctacac
aactggatgaatgagttcaaacgctgggtaccaaccctgaaggctgtctgtcttattggg
gacaaggatgcaagagcggcgttcatccgcgatgtcatgatgccaggggaatgggatgtt
tgtgtcacatcctatgagatggtcatcagagaaaaatcggtcttcaagaagttcaactgg
agataccttgtcatcgacgaagctcacaggataaaaaatgagaagtccaagctctcagag
attgtccgtgagttcaaaaccaccaaccgtctcctcctgactggaacacctctgcagaac
aatctccatgagctgtggtcactcctcaacttcctgctgcctgatgtcttcaactctgcc
aatgactttgattcttggtttgacaccaacaactgtctgggggaccagaagctggtggag
cgtctgcatgcggtgctaaggcctttccttctgcgtcggataaaagctgaagtggagaaa
aacctgcctcccaaaaaagaggtgaagatttacctcggactgagtaagatgcagcgagaa
tggtacacacgaattctgatgaaagacattgacatcctcaattcttctggaaaaacagac
aagatgcgtctgttgaatatcttgatgcaactgcggaagtgctgcaaccacccatacctg
tttgatggggccgagcccgggcccccctacactaccgacagtcacttggtcaccaacagt
ggaaagatggtggccctggataaactgctgcccaaagtccaggaacaagggtctagagtc
ctcatcttcagccagatgaccagggtccttgatatccttgaggactactgcatgtggaga
ggttatgagtactgccgtctagatggaaacactccacacgaagccagacaggatgccata
gaggcctacaatgctgaaaacagcagcaagttcattttcatgttgagcaccagagctgga
ggtctgggcattaacctggcaactgcagatgtcgtcatcctgtatgactctgactggaac
cctcaagtggacctgcaagcaatggacagggctcataggattggtcagaagaaaccagtg
cgtgtgttccgcctcatcactgataatacagtcgaagagaggattgtagaaagagctgag
atgaagttgaggctagactccatagttatacaacaagggaggctgatggagcagtctaac
aaactggggaaagatgagatgctgcagatgatcaggcatggggcaactcacgtcttcgcc
tccaaagacaatgagctcacagatgaagacatcaacactatcttagagaggggggcaaag
aagacggctgagatgaacgagcgcatggagtctctgggagagagctccctcaggaacttc
acggtggacacaggaggagcagagaccagcctctacaactttgaaggggaggactacaga
gagaagcaaaagctgagtatgatggaatggattgagcctcctaaaagagagaggaaagcc
aactatgcggtggatgcctacttcagagaagccctgcgtgtcagtgaacctcgagccccc
aaggccccacgtccccccaaacagcccaacatccaggacttccagttctttcctcctcgc
ctgtttgagctgctggagatggagatcctttattacaggaagactataggctacaaggtc
cccaggagccctgacatccccaacgctgcccaggtgcagaaggaggagcagaggaagatt
gacgaggcggggcccctcagtcccgaggagactgaggagaaggagaaacttctcacacag
gggttcacaagttggaacaagcgagatttcaatcagttcattaaagccaatgagaaatac
ggccgtgatgacatcgacagcattgctcgggatgtcgaggggaaaaaccctgaggaagtc
attgaatattctgccattttctgggagcggtgcaatgaactccaggatattgaaaaaatc
atggctcagatcgagcgtggcgaggcccgtatccagaggaggatcagcattaagaaggcg
ctggatgcaaagattgcgagatacaaggccccattccatcagttgaggattcagtatggc
accaataaagggaagaactacacggaggaggaggacaggttcctgatctgtatgctccac
aagatgggctttgacaaggagaatgtttatgaagaactccgacagtgtgtccggaatgct
ccccagttcagattcgactggttcatcaagtcccgaactgccatggaacttcagcgacgt
tgtaacactctcatctccctcatcgaaaaagaaaatatggagattgaggaaaaggaacgt
gctgaaaagaagaaaaggaccacaaaaagccagatggctcacaaaaggaaggcagatgcg
tcatcagaagccacaggacgtaaagagaagaaagccagagcctga
DBGET
integrated database retrieval system
