Oncorhynchus keta (chum salmon): 118391322
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Entry
118391322 CDS
T09424
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118391322
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
118391322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
KH_N4BP1_1st
zf-CCCH_2
zf-CCCH_4
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
118391322
NCBI-ProteinID:
XP_035638491
LinkDB
All DBs
Position
12:31491266..31498763
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AA seq
973 aa
AA seq
DB search
MVLELAVPANAGPLLHRSIQHIERIFRVRVSYGSAESNCDSANVSTSNIIIVRVGEGEED
DCTKAKDYIVSLISPAHRKRERLTLALHIQLAALKSAIEYDSQAVVEVREHVVDISGGER
NVMTAWSMVEKIKMEKHPCREEAPELTEAQQPSGESEEGSSSESESEEQHQLQLNSGGCK
RKESFSATKPHRQLCRSPCLDRPSFSQSCTLPELRIEDTKATAVLKHASDKEYQTKMEFA
LKLGYSGEQVETVLNKLGAGALINDILAELVRLGNKGEPEVQASSNTGTFVSRGGPCVKE
AVSPEVSLEDDSVDPYDNLRPIVIDGSNVAMSHGNKEVFSCLGIQLAVDWFVEKGHKDIT
VFVPAWRKEQSRPDAPITDQDILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLACDS
DGIIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRP
VVPEHKKQPCPYGKKCTYGHKCKYYHPERANQPQRSVADELRAFAKLSAVKTMSEGALAK
CGTGPTTAKGDSGSEAKRVAPKRQSDPSIRSVACEPEERLSAVRKPEANSVPSLVSALSV
PTMQPAKSHGAGALNTRSASSPVPGSLQFTHSSLEHMSSVQYPHPPILVTNSHGASVTYS
EQFPKYDSVSTDHGYYSMLSDFSNMSMSSMHNVDSFCSMEHEHGIYQRNPSQHCPEPCLS
HSNSDSFSSYGELYMSSVDSSLDESIKGQQSPAQSRLQAFSHGGFHHEALTRVQSYGPEQ
PKQGPSRKQSISHLAPHVQHPAVGARSSCPGDYPLPQNVLPSQSSQPGRSLGMTRMDSIS
DSRLYESNPMRQRRPPLCREQHASWDPLPCGSESYGYHSYPLSNSPMQPCCERVMVRSMP
DKMEQIWRSPWENPPQAEHQERHVIPEHQYQTYRNLCNIFPAFVVHSVMEKNPHLTDPQQ
LAAVIVTKLRSCH
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctggcagtgcccgcaaatgcaggcccattgcttcaccgctccatccag
cacattgagcgtattttccgggtgagggtcagctacggatccgctgagtcaaactgcgac
agcgcaaatgtcagcaccagcaatataatcatagttcgtgtcggagagggcgaggaagat
gactgcaccaaggcaaaagattacatagtgtccttaatttcgccagctcaccgaaagagg
gagcgtctaacgttggctttacacatacagctggctgcgctgaagtcagccatcgagtat
gattctcaggctgtggtggaggtgagggagcatgtggtggacatctccggtggcgagagg
aacgtgatgactgcatggtcgatggtggagaagatcaaaatggagaaacacccatgcagg
gaagaggcccctgagctgactgaggcccagcagcccagtggggagtctgaggagggaagc
agctcagagagcgagtcagaggagcagcatcagctgcagctgaacagtggcggctgtaag
aggaaagagtccttcagtgccaccaagcctcaccggcagctctgtcgctctccatgcctg
gaccggcccagcttctcccagagctgcactctaccagagctccgcattgaagacaccaag
gccactgcagtgcttaaacatgccagtgacaaggagtaccaaaccaagatggagtttgcc
ttgaagctgggatactcaggtgaacaggtggagaccgtgctgaacaagttaggggctggt
gcccttatcaatgacattctggctgagcttgtaaggcttggtaataaaggagaaccggag
gttcaagccagcagtaacaccggcacgttcgtctcccgtggaggcccctgtgtcaaagag
gctgtcagtccagaggtgtcacttgaagatgattctgtggatccttatgataatctcagg
cctatcgtcattgatggatcgaatgtggcgatgagccatggaaacaaagaggtgttctct
tgccttggtatccaattggctgttgattggtttgtggagaaaggacacaaagacatcaca
gtgtttgttcctgcctggaggaaagagcagtcgagacctgacgcccccattacagaccaa
gacattttgcggaagctagagaaagaaaagatcctagtgttcaccccatctagaagagtc
caaggaaggagagtggtgtgctatgatgatcgcttcatagtgaagctggcctgtgactct
gatggcattattgtgtcaaatgacaactacagggacttacagaatgagaagccagagtgg
aagaagttcatagaggagcgactgctgatgtactcatttgtcaatgataaattcatgcca
cctgatgatcctttaggaagacatggtccaagtttagagaatttcctccgcaagcgtcct
gttgttccagagcacaaaaagcaaccctgtccatatgggaaaaaatgcacttatggacat
aagtgcaagtactatcacccagagcgtgcaaaccagcctcagcggtcagtggctgatgaa
ctgagagcgtttgccaagttgtctgctgtaaagacaatgagcgagggggccctggccaag
tgtggcactggacccaccacagctaagggggacagtggctctgaggctaaacgtgtggcc
cccaagcgccagtctgatcccagcatccgctcagtggcctgcgagccagaggagagactg
tctgctgtccgtaagcctgaggcaaattctgtgccttccctcgtgtctgccctcagtgtg
cccaccatgcagcctgctaagagccacggggctggtgccttgaacactcgatcagccagc
agcccagtacccggctccctccagttcacccacagctccctggaacacatgtctagtgta
cagtacccacacccacccatcctagtcaccaacagccatggtgcttctgtcacttacagt
gaacagtttcctaaatatgattctgtgagcacagaccatggatactactctatgcttagt
gatttttctaacatgagcatgagcagcatgcacaacgtggacagcttctgtagcatggag
catgagcatgggatttatcagcgaaatcccagccagcattgccctgagccctgcctcagc
cactcgaacagtgactccttctcctcttatggggaattatacatgagctcagtggacagt
agcctggatgagagcataaaggggcagcagtctcctgcacagagcagactccaggccttc
tcccatggggggttccaccacgaggccctgacccgagtgcagagctatggccctgagcag
cctaagcagggtccaagcaggaagcagtccatatcccacctggcaccgcatgtccagcac
cctgctgttggggccaggtccagctgcccaggggactaccccttacctcagaatgtcctc
ccgtcacagtcctcacaaccgggacgctccctgggcatgacacgcatggacagcatctca
gactccaggctgtacgagagtaaccccatgaggcagcggagacccccactgtgccgcgag
cagcatgccagctgggatccgctgccctgcggcagtgaatcctatggataccactcgtac
cccctgagtaacagcccgatgcagccgtgttgtgagcgggtgatggtccgcagcatgcct
gacaagatggagcagatctggaggtctccgtgggagaacccgcctcaagccgagcaccag
gagcgccatgtcatcccagagcaccagtaccaaacataccgcaacctctgcaacatcttc
cctgctttcgtggtgcactctgtcatggagaaaaaccctcatctaacggacccacaacaa
ctcgctgctgtcattgtcacgaagctgaggtcttgccattaa
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