Oncorhynchus keta (chum salmon): 118391329
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Entry
118391329 CDS
T09424
Name
(RefSeq) replication factor C subunit 4-like
KO
K10755
replication factor C subunit 2/4
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03030
DNA replication
oke03410
Base excision repair
oke03420
Nucleotide excision repair
oke03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118391329
03410 Base excision repair
118391329
03420 Nucleotide excision repair
118391329
03430 Mismatch repair
118391329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oke03032
]
118391329
03036 Chromosome and associated proteins [BR:
oke03036
]
118391329
03400 DNA repair and recombination proteins [BR:
oke03400
]
118391329
DNA replication proteins [BR:
oke03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
118391329
DNA Replication Termination Factors
ELG1-RFC complex
118391329
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
118391329
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
118391329
Check point factors
HRAD17(Rad24)-RFC complex
118391329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_16
AAA_22
AAA_assoc_2
AAA_30
AAA_11
Mg_chelatase
DUF815
SLFN-g3_helicase
AAA_28
AAA_24
RuvB_N
AAA_14
AAA_5
Gp44_lid
AAA_19
Cdc6_lid
ResIII
Kinesin
AAA_7
ATPase_2
RPA_interact_N
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
118391329
NCBI-ProteinID:
XP_035638508
LinkDB
All DBs
Position
1:complement(66526098..66533201)
Genome browser
AA seq
355 aa
AA seq
DB search
MQAFLKGTSTQGTRPVKEKGTSGEKKQKSVPWVEKYRPKCMEDVAFQEEVVAVLKKTIEG
ADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKRFAQ
LTVAGHRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVSRIIE
PLTSRCSKFRFKPLANQVQEERLLDICDKENLKYSKEGIAALVKVSEGDLRKAITFLQSA
ARLNADNEITESAVVEIAGVVPPKMIDNLLKICYKGTFEKLEIAVRNMADEGYAATQIIN
QLHEAIIEEELNDKQKSAITEKMAVVDKCLVDGADEYLQMLSMCSVIMQQATLSH
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgtttttgaaaggaacatcaactcaaggcaccagacctgtgaaagagaaaggt
accagtggagagaagaagcagaaatctgtcccctgggtagagaaatatagaccaaaatgt
atggaagacgtggcgtttcaagaggaggtggttgctgtgctgaagaagactatagagggc
gctgatctccccaatctgctgttctatggaccacctggaacaggaaagacctccaccatc
ctggctgcagccagggaactttatgggccagagctgtaccgacagagagtgctggagctg
aacgcctccgatgagagagggattcaggtggtgagagagaaagtcaagagatttgcccag
ctgactgtagcaggccaccgcactgatgggaaaccatgcccaccctttaagatcatcatc
ctggatgaggctgactcaatgaccaatgctgctcaggctgctctcagacgcaccatggag
aaggagtcccggaccacccgcttctgtctcatctgcaactacgtcagcaggattattgag
cccttgacatccagatgctccaaattccgcttcaaacctctagcaaatcaggtccaagaa
gagcgcctgctggatatctgtgacaaggagaatctcaagtactcaaaggagggtattgca
gcgttggtgaaggtttcagaaggggatcttagaaaagccataacctttcttcaaagtgct
gcacggctgaacgcagataatgagatcacggagagtgcggtcgtagagatagctggggtt
gttcctcccaagatgattgacaatttgctcaaaatctgttacaagggaacatttgaaaaa
ctagagattgctgttcggaacatggcagatgagggctatgctgccacacagatcatcaac
cagctacacgaagccatcatagaggaagagctgaacgacaagcagaagtctgccatcacg
gaaaagatggccgtggtcgacaagtgtttagtggatggtgcagatgagtacctgcagatg
ctgagtatgtgttctgtgatcatgcagcaagccactctgagtcactga
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