Oncorhynchus keta (chum salmon): 118391524
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Entry
118391524 CDS
T09424
Name
(RefSeq) exosome RNA helicase MTR4-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118391524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118391524
03041 Spliceosome [BR:
oke03041
]
118391524
03009 Ribosome biogenesis [BR:
oke03009
]
118391524
03016 Transfer RNA biogenesis [BR:
oke03016
]
118391524
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118391524
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118391524
Spliceosome [BR:
oke03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118391524
Complex C
U4/U6.U5 tri-SnRNP related factors
118391524
Ribosome biogenesis [BR:
oke03009
]
Eukaryotic type
Pre-60S particles
Helicases
118391524
Transfer RNA biogenesis [BR:
oke03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118391524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
118391524
NCBI-ProteinID:
XP_035638905
LinkDB
All DBs
Position
12:complement(42727235..42775623)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTSSTKKKPPIPEKGKATSNNDKGGTNKPPAAKTKREADNDGTD
EVVFGKKAKLETVSTEEINLADCMPKVKVEPVETVEGCNHEVALPANEEYTQLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALRGKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGGKWDTKGRKG
GTRGPSNVFKIVKMIMEKNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKQLVEEVFNN
AVDCLSDDDKKLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMG
KLEKMYNAIEIPNEESVVTYYKIRQQLAKLGKEIEEFVHKPKYCLPFLQPGRLVKVKNEE
VDFGWGVVVNFSKKSNVKASTGDADPLYVVEVLVHCSQESVKNAATEAAKPAATGEKGEM
QVVPVMLRLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKIIQKVEAFEHRMYSHPMHSDPSLEAVYSLCEKKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLTAEQVT
ALLSVFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEETYLDKFRPHL
MDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFADG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgttcgatgaagaacaaacatcttca
actaaaaagaaaccaccaatacctgaaaaggggaaagcaaccagtaataatgataaaggt
ggaacgaacaagccccctgctgccaagaccaagagggaagcagacaacgacgggacagat
gaggtggtgttcgggaaaaaggccaagctggagactgtctctacagaggagatcaatctt
gcagactgcatgcccaaagtgaaggtggagccggttgagacagtggaaggatgcaatcac
gaggtggctctgccagccaatgaggagtacacacagcttaagcctcgtgtgggaaaagca
gccaaggagtaccccttcattctggatcccttccaacgtgaggccattctgtgtatagac
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagccctgagagggaagcagagggtaatcttcaccagccccatcaag
gccctgagtaaccagaagtacagagagatgtacgaagagttccaagatgttggcttgatg
accggtgatgtcaccattaaccccactgcctcctgccttgtcatgacgactgagattctg
aggagcatgttgtaccgagggtcagaggtcatgagagaggtggcctgggtcatctttgat
gagatccattacatgagagatgcagagcgtggtgtggtctgggaggagaccatcatcctc
cttcctgacaatgtccactatgtcttcctgtccgccactatccccaacgcaaagcagttt
gctgagtggatctgccacctccacaaacagccctgtcacgtggtgtatactgactttcgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtg
gatgagaacggagagttcagagaggacaacttcaacacggccatgcaggtgctgagagac
acaggggactctgggggcagcagcggaggtggcaagtgggacaccaagggacgcaaagga
ggaacacgagggccgtccaacgtgttcaagatcgtgaagatgatcatggagaagaacttc
cagccggttatcatcttcagcttcagtaagaaggagtgcgaggcctatgccctgcaggtg
tccaagctggacttcaacacagatgaggagaagcagcttgtagaggaggtgtttaacaac
gctgtagactgtctgtctgacgatgacaagaagctgcctcaggtagagaatgttctacca
ctactgaggagaggtatagggattcaccacgggggactgctccccatcctgaaggaaacc
attgagatcctcttctctgaggggctaattaaggcgttgtttgccacagagacctttgcc
atgggcatcaacatgcctgcccgcaccgtcctgttcaccagcgcacgcaagtttgacggc
aaagacttccgatggatcacgtctggggagtacatccagatgtctggccgagctggcagg
agagggatggacgagagaggtattgtcatcttcatggttgatgagaagatgagccctgca
gtggggaaacagctgctcaagggctcagctgaccctctcaacagtgccttccacctcacc
tacaacatggttctcaacctgctgcgggtggaggagatcaacccggagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtgcccggcgtcgtagagaagatggga
aagctggagaagatgtataacgccatagagatccccaacgaggagagtgtggtcacttac
tataagatccgccagcagctggctaaactgggcaaagagatcgaagagtttgtccacaaa
cccaagtactgccttcctttcctccagcctggtagattggtcaaggtcaaaaacgaagaa
gttgactttggatggggcgtagtcgttaatttctcaaagaagtcaaacgtcaaggccagt
acaggtgatgcagaccctctgtatgtggtggaggtgctggtccactgtagtcaggagagt
gtgaagaatgcagctacagaggctgctaaacctgctgccactggggagaagggtgaaatg
caggtggttcctgtgatgctccgcctcttgacctctatcagttcagtccgtctctacatc
cccaaagacctccggccttatgacaacagacagagcatgctgaaatccatacaggaggtg
cagaagcgcttcccagacggagttcccctgctggaccccattgatgacatgggcatcaag
gacccaggcctgaagaagatcatccagaaggtggaggcattcgaacacaggatgtactcc
caccccatgcactctgaccccagcctggaggctgtctactccctctgcgagaagaaagcc
ctgattgcaggggacattaaaggggccaagcgggagctgaaaaaggctaggaccgtcctg
cagatggacgagctgaagtgcaggaagcgtgtcctgagacgtctggggttcgctacttcc
tctgatgtcatcgaggtgaagggcagagtggcctgtgagatcagcagtgctgatgagctg
ctgctgactgagatggtgttcaacggtctgttcaacgatctgactgcagaacaggttact
gctctgctcagtgtcttcgtcttccaggagaatgcgaatgagatgcccaagctgacagag
cagctggctggaccactgagacagatgcaggagtgtgccaagcgcattgctaaggtgtct
gcagaggctaaactggaggtggatgaggagacctacctggacaagttcaggcctcacctg
atggatgtggtctacacctgggctaacggatccaccttcgctcagatctgcaagatgacc
gacgtcttcgaaggtagtatcatccgctgtatgcgtcgcctggaagaactgctgcgtcag
atgtgtcaggcagccaaggccatcggcaacaccgagctggagaacaagtttgcagatggt
atcacaaaaatcaagagggatattgtgtttgctgctagtctatatctgtaa
DBGET
integrated database retrieval system
