Oncorhynchus keta (chum salmon): 118391643
Help
Entry
118391643 CDS
T09424
Name
(RefSeq) transcription factor SOX-30-like
KO
K09271
transcription factor SOX15/30
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118391643
Transcription factors [BR:
oke03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118391643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
118391643
NCBI-ProteinID:
XP_035639053
LinkDB
All DBs
Position
12:1358242..1366285
Genome browser
AA seq
637 aa
AA seq
DB search
MFATMDRHPKRRAQMTFKKSEPSQNEDDSGPPASKKNASEREEPTSSTERHRGDGEQKRP
VGRPKGSGRSGNSVIGDVQVRPKVIFKADNKWGGDGELMPTSSTHLKGAIQGRTVTFEKE
SASSLASKQSKATFDYPTTSQVLVIKEEVITTAPGQAKVKVDQEPATTHHQGCPPVAPTV
DFSKPIHVVHENGMTFTVLDGKAITLSKVPYPPLVHVNVPPPPVKVKTRGMNLTMPPSEA
ENLEVPQSIDRNGYIKRPMNAFMVWARIHRPALSKVNPTANNADISVQLGIEWSKLTEEE
KRPYYVEARKLKDKHRQEFPGWIYQPRPGKRKCYPSVMSFAPESSCCSAGTSGPAAESYP
MNMMTMANTNTSSCVPYTQATGSNDHGLQVAITAAPNASQTTSPVSIFFQTTACPHPHPT
TSGGKPAERKHEASHSASNPEEAPKPRKISRQQAYYNSANEMPSTSMASSSRGLQMPLPN
MAHPRMYPPSPMPHPVGLFPTPRFPFAPPYFMPGPNFYPPGSYPYLHSPYSYPVLQPQDF
SNPMATPMATPGYPYDDNYDQHESTFSLLNRDYPFRQSGESGQRCQGQAPTASELLGSVP
LLDVRALENVFTNSASVQEVQVPNEEDEEDVRVMRIL
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccacaatggacaggcatcccaagcgaagagcgcaaatgacattcaagaaaagt
gaaccaagtcaaaacgaagatgacagtgggcctccagctagtaagaaaaatgcaagtgaa
cgcgaggaacctacatcttcaacagagaggcatcgaggtgatggagaacaaaaaagacca
gtgggtaggcctaaaggcagtggacgttctggaaatagtgttattggagatgttcaggtt
aggcctaaagttatttttaaagctgataataaatggggtggtgatggagagctaatgccc
acaagttcaacacacctcaagggagccattcaaggtcgaacggttacatttgaaaaggag
agcgcatcatcattagccagtaaacagagtaaagccacatttgattatcccacgacatct
caagtgctggtcatcaaggaggaggtcatcacaactgctccaggtcaggccaaggtcaaa
gttgaccaagaacctgcaacaacgcatcatcaaggatgtccgcctgtggctcccactgta
gacttctccaaaccgatccatgttgtccacgaaaatgggatgaccttcacagtattggat
ggtaaagccataacgctcagcaaagttccatacccaccacttgttcatgtgaatgttccg
ccacccccagtaaaagtgaagactagagggatgaatctcaccatgccaccatcagaagca
gaaaatcttgaagtaccacagagcatagacaggaatggctacatcaagaggcctatgaat
gcgttcatggtctgggcgagaatccacaggcctgccctgtccaaggtcaacccaacagcc
aataatgcagacatcagtgtgcagctaggaatagagtggagcaagcttactgaggaagag
aagaggccctactatgttgaagcacgtaaactcaaagacaagcacagacaggagttccca
ggttggatctatcagcccagacctggaaaaagaaagtgctacccttctgtgatgtccttt
gctcctgaatcatcttgctgctctgcagggacaagtggacctgcggctgagtcttatccc
atgaacatgatgactatggccaatactaacaccagctcctgtgttccatacacacaggcc
acaggctctaatgaccatggtctccaggtggctataacggcagctccaaatgcctctcag
actaccagcccagtctccatattcttccagactactgcctgcccacatccccacccaaca
acctctggtggtaagcctgcagaacgcaagcatgaagccagtcactctgccagcaatcct
gaagaagctcccaaacccagaaaaatcagcaggcaacaggcctactacaattctgccaat
gagatgccctcaacaagcatggcatccagctccagaggtctccaaatgccactccctaac
atggctcaccctcgcatgtatcctccatctcccatgccacatccagtgggcctcttcccc
acccctcgcttcccctttgctccgccctacttcatgcctggacccaatttttatcctcca
ggatcatacccttacctacacagcccatactcctacccagttctccaaccccaggatttc
tcaaaccccatggctactcccatggctactccgggctacccctatgatgacaactacgat
cagcatgagtccacattttcccttctcaacagagactacccgtttcggcagagtggagaa
agcgggcagagatgtcaagggcaggcccccactgcctctgagctcctaggttcggtccca
cttctggacgtacgtgccctggagaacgtcttcaccaactctgccagtgtccaggaggtc
caagtccccaatgaggaagacgaggaagatgtgcgtgtgatgagaattctctag
DBGET
integrated database retrieval system