Oncorhynchus keta (chum salmon): 118392478
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Entry
118392478 CDS
T09424
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118392478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118392478
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118392478
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
118392478
NCBI-ProteinID:
XP_052316007
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Position
1:71224032..71275097
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AA seq
419 aa
AA seq
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MCCENLEFGEITGISLRFILFAGVTVKLCDSEEVTEFGETCPQKKMTKLLMQAGAMKRNN
CYMEDTGQEDQESDSDNEDDDDDDMCVTIGAPSRPFSAFGSTPVNLIIKVAGRTHASGNK
WKTKEPLKEEVTVCPKAKGVDVDAQGSVNGIPVLEVDVESFEEKPWRKHDSHFLDYFNYG
FNEDSWKAYCENQRRLRMGYKVMNHASATKLMIQEWDLPCFRSDYSTPSNHYKSALSSRK
TSGTTNVIGGQTGTISWVEEQRRHNIEGNNIQVLSKPSDAEPTPTKMPPFFPPPPFPPPP
YNVNSAPPLIPPPRIPINVPPTGYPPGAPPPSLISTLDMTSALGPCLRTTWHDDSLLSPV
LLAVLLLQFQLFCLRLWNPDLFTGRATCPRPAVFNSLETAGAVEILLMISYEKPTDIYS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgtgctgtgaaaacctcgagtttggcgaaataactggtatttcattgcgatttatttta
tttgctggagtaactgtcaagttgtgtgattcagaagaagtgactgaatttggagagaca
tgtccgcagaagaaaatgacaaagcttctgatgcaagcaggggctatgaagaggaataat
tgttatatggaggatacaggtcaggaagaccaagaaagtgacagcgacaatgaggatgat
gatgatgatgacatgtgtgtaaccattggagccccgtctcggccgttcagtgcctttgga
tccacgcctgttaatctcatcattaaggttgcagggagaacacatgcatcaggtaacaag
tggaagacaaaggagcctcttaaagaagaagttacagtttgccccaaagccaaaggagtg
gacgtggatgcacagggtagtgttaacggaatccctgtgttggaggtcgacgtggagtct
tttgaggaaaagccatggagaaagcatgactcgcacttcttggactactttaactatggc
tttaacgaggactcctggaaagcctactgtgagaaccagaggagactacgcatggggtat
aaggtcatgaaccacgcttcagccactaaactcatgatccaggaatgggaccttccctgc
tttagatctgactactccacccccagcaaccactacaaatcagccttgtccagtagaaag
acaagcggcaccaccaatgttattggaggacaaactggtaccatcagctgggtagaggaa
cagagacgtcacaatatagaaggaaataacatccaggtgctttccaagccatctgacgct
gagcctactcccactaagatgccccctttcttccccccgcctccattcccgcctccaccc
tacaatgtcaactccgcccctccactcattcctccaccacggatccccatcaatgttcct
ccaactggctaccctcctggagcacccccgccctctctgatctctaccttagacatgacc
tcagccctaggaccatgcctcaggactacctggcatgacgactccttgctgtccccagtc
ctcctggctgtgctgctgctccagtttcaactgttctgcctgcgtctatggaaccctgac
ctgttcaccggacgtgctacctgtcccagacctgctgttttcaactctctagagacagca
ggagcagtagagatactcctaatgatcagctatgaaaagccaactgacatttactcctga
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