Oncorhynchus keta (chum salmon): 118392777
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Entry
118392777 CDS
T09424
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04510
Focal adhesion
oke04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118392777
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118392777
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
OVT1
Motif
Other DBs
NCBI-GeneID:
118392777
NCBI-ProteinID:
XP_052316066
LinkDB
All DBs
Position
13:38457763..38484407
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AA seq
1781 aa
AA seq
DB search
MLILHIASLLSLGWRSFAQLPEFGDVCTEGSCYPATGDLLIGRAHKLTASSTCGIEKPER
FCIVGHLEEEKKCFVCDSREKYDERMNHTTSHSIENLVTTFAPNRLKTWWQSENGVENVT
IQLNLEAEFHFTHLIMTFKTFRPATMVIERSMDFGEKWQVYRYYSYNCESAFPGISVGPM
VKVDDIICDSRYSDIEPSAEGEVIFRVLDPAFEIEDPYSPRIQNMLKITNLRVQFTKLHT
LGDNLLDSRDEVTEKYYYALFDMVVRGNCFCYGHASKCAPVDGIHVGTEGMVHGHCMCNH
NTEGLNCEHCKDFYNDLPWRPAEGRNTNACKMCECNHHSRSCHFDMAVYLSTGNVSGGVC
DECQHNTMGRQCEQCRPFYYQHPERHLRDPNICEPCSCDPTGSLQGGVCDGRTDVSAGLI
AGQCRCKTSVEGERCDHCRQGHYGLGQGPNGCLQCTCNPLGTLPGGSPCDMDTGNCFCKR
LVTSRNCDRCLPQHWGLSNDMDGCRPCDCDQGGALNNDCSPISGQCQCREHMYGRRCDQV
ESGYYFIALDHYTYEAEEAKHGPGVTVVPRPYPLNRSPTWTGAGFVKVPEGAHLEFHINN
LPDSMDYDMLIRYEPQLPDQWEQVEIRVIRPYSMRVGQPASPCENTLQGGDQQLVSLLPG
SRHVLLLRPVCLEKGRNYTVRLGLPLYSSLSDVQSPYTLIDSLVLIPRVRELLLFEGSQG
EGAWDTFQRYRCLESSQSVIKSPMTDICNNYIFSVSALLHQGAMACQCDSQGSLSAVCDP
SGGQCRCRPNVAGRNCDRCAPATFLFSPLGCRRCECSPTGSVNAFCHEATGQCECVPGAS
GRQCVHCLPGYWGFPQCQPCQCNGNSDYCHPQTGECQGCRAFTTGHMCERCLDGYHGDPV
LGLGGHCRPCMCPDGPGSGRQYADSCYQTADNYQLVCACSPGYRGARCDECAPGHYGNPQ
VPSGRCLPCQCNDNIDQLDPGSCDAHTGVCLKCLHHTEGYGCQRCKLGYYGNATSQSCRR
CMCYSVGTMSEACPSPGECHCDLQTGQCPCRPNVIGQNCDRCALDTFNIGSGKGCQTCDC
DPTHSFGTSCNELSGQCSCRSGFGGRKCNECRDKFWGDPEVKCQACDCDLRGIASEQCHR
SSGQCVCVEGVSGPRCNQCARGYHGTFPACERCHQCFAEWDRVVGELSNQTQRLKDHVTE
LQTSGVTAPYKDTVSSLEISANAISAIVENNPAIQKMEDVQQMMQQATELVADLNERLNV
SEDSLSRLVVNANDTEASLDALRKQAQELERTVTDIRDHIKTVKNSNIEGAMDTITKAHL
ESKRAEIRANQTTSYPDNTLEQSATLRREAEARLSQNQAEFDLRQQKHTERLESLATELN
TLDLSELSKQTCGAAGGEEGCAASPCGGVGCVSEDGTLRCGGEGCDGLFTQTQSTLKTAK
DFDQEILSTLQEVDKLSRMVWEGKVRADEAKLNAQEVLLKSNQSRDRVEQSNEQLRSLIK
EIRGLLTNDRAKVEVIEAVSNEVLALEMPTSPEQLEALTKEIRDRVGALTSVEDILSQSA
NDIHTAERLLEQARTASQEVSEMKETAALVKEALETTERAQNAAIDAVKQAHNNTRGTLD
LITSVESETAESELCLSNATLRLLQLERDVTLLRESSLGTSHHTQHTESLSETARQDAEQ
ALQEFDLEVKGKYSVVEGLVVTKAEGVSDARKRAELLQQEAKELLTQSSVKLQRFRELER
SYAANQRTLEAKTVQLAGLEKTARQLLNDISQKVMVYSTCS
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgctgatattgcacatcgcatcacttttgtccctcgggtggcgctcctttgcccagctg
ccagagtttggggatgtgtgcactgaggggagctgctaccccgccaccggggaccttctg
atcggccgtgcgcacaaactcaccgcctcctccacctgcggcattgagaagcctgagcgc
ttttgcatcgttggtcacttggaggaggagaagaagtgttttgtgtgtgactccagggag
aagtatgatgagaggatgaaccacaccaccagccacagcatcgaaaacttggtcaccacc
ttcgcccccaaccgcctcaagacctggtggcagtcagagaatggggtggagaatgtgacc
attcaactgaacctggaagctgagttccacttcacacatctcatcatgacttttaagacg
ttccgtccggctaccatggtgatcgagcgttccatggattttggggagaagtggcaggtg
taccgttactatagctataactgtgagtccgccttccctgggatatccgtgggacccatg
gtcaaagtggacgacatcatctgtgactctcgctactctgacatagagccgtccgcagag
ggagaggtgatattcagggtgctggacccggcgtttgagattgaagacccttacagtccc
aggatacagaacatgctgaagatcactaacctgcgtgtccagttcactaagctccacaca
ctgggtgacaacctgctggactccagagatgaggtcacagagaaatactactatgccctc
ttcgacatggtcgtccgcggcaactgcttctgctacggacatgcctccaaatgcgcccct
gttgatgggatacacgtaggcacagagggcatggtccatggtcactgtatgtgtaaccac
aacacagagggtctgaactgtgagcactgtaaggacttctacaacgacctgccctggagg
cctgcagagggacgcaacaccaatgcctgcaagatgtgcgagtgtaaccaccactccagg
tcatgtcactttgacatggctgtgtatctgtctacggggaacgtgagtggaggagtgtgt
gatgagtgtcaacacaacaccatggggcgtcagtgtgagcagtgcagacccttctactac
cagcaccccgaaagacacctgagagaccccaacatctgtgaaccgtgtagctgtgacccg
acgggctccctgcagggtggtgtgtgtgacggcaggacagacgtgtccgctggtctgata
gcaggacagtgtcgctgtaagaccagtgttgagggagagcgctgcgaccactgtagacag
ggacactacggcctgggacagggaccaaacggctgcctgcagtgtacctgtaatcccctg
ggcacactgcctggaggaagcccatgtgacatggacacaggaaactgcttctgcaaacgc
cttgtcaccagcaggaactgtgaccggtgtctgccgcaacactggggcctgagtaatgac
atggacggctgcagaccatgtgactgcgaccagggcggagccctcaacaatgattgttct
ccgatatcaggccagtgtcagtgtcgagaacacatgtatgggaggcgttgtgaccaggtg
gagtcaggatactacttcatcgccttggaccactacacctacgaggctgaggaagccaag
cacggccctggtgtgacggttgttcccaggccctatcctctgaaccgtagtcctacctgg
acaggggctgggtttgtcaaggtacctgagggagcccacctggagttccacatcaacaac
ttacctgactccatggactacgacatgctgattcgctacgagccacagttgccggatcag
tgggagcaggtggagatcagagtgatacgtccgtactcaatgagagtggggcagccagcc
agtccatgtgaaaacacgcttcaaggaggagatcagcagttggtgtctcttcttccagga
tccagacatgtgctgctcctgaggcctgtgtgtctggagaaggggcggaactacactgtg
cgtctcggcctgcctctttactcctctctcagtgacgtccaaagcccctacacgctcatc
gactccttggtgttgattccgcgggtgcgtgagctgctgttgtttgagggttctcagggt
gagggggcgtgggatacgttccagaggtaccgctgtctggagagcagccaaagcgtcatc
aagagccccatgacggacatctgcaacaactacatcttcagtgtgtctgccctgctacac
cagggggctatggcgtgccagtgtgactcccagggctctcttagtgcagtgtgcgacccc
agcggcgggcagtgccggtgtcggcccaatgtggcaggcaggaactgtgaccgctgtgcc
cccgccaccttcctgttcagcccattaggatgcagacgctgtgagtgtagtcctacgggc
tctgtgaacgctttctgccacgaggctacaggtcagtgtgagtgtgttccaggggcgtca
gggcgtcagtgtgtccactgcctgccaggctactggggcttccctcaatgccagccctgt
cagtgcaacggcaacagcgactactgccaccctcagaccggggagtgccagggctgccgc
gccttcaccaccgggcacatgtgtgaaaggtgtctggatggttaccatggcgaccccgtg
ttgggtttggggggtcactgccgcccctgcatgtgtcccgacgggccggggagcgggcgc
cagtacgcagacagctgctaccagaccgccgacaactaccagctggtctgtgcctgcagc
cctggatacagaggagccaggtgtgacgagtgtgccccaggtcactatggtaacccccag
gtgcccagcgggcgctgtctgccctgccagtgtaacgacaacatcgaccagctggacccg
gggtcctgcgacgctcacacaggtgtctgcctcaaatgcctgcaccataccgagggctat
ggctgccagcgctgcaagctgggttactacggcaacgccaccagccagagctgcaggagg
tgtatgtgttattcagtgggcacaatgtcggaggcgtgtccgtctccgggggagtgtcac
tgtgacctgcagactggccagtgtccctgccggcctaatgttattggccagaactgcgac
cgctgtgcccttgatacgttcaacattggaagcggaaagggctgccagacctgtgactgt
gacccaacccactcctttgggacgtcgtgcaacgagctgtcagggcagtgctcgtgcagg
tcaggtttcgggggtcgaaaatgcaacgagtgccgagataagttctggggagaccctgag
gtcaaatgtcaagcgtgtgactgtgacctgcgtggcatcgccagcgagcagtgccaccgt
tcgtccggccagtgtgtgtgtgtggagggtgtgtctgggcccaggtgtaaccagtgtgcc
agagggtaccatgggacgttccccgcctgcgaacgatgccaccagtgctttgccgagtgg
gaccgcgtggtaggggaactgtccaatcagactcagcgtttgaaggatcatgtgacagag
ctccagaccagtggggtgacggcgccgtacaaagacaccgttagcagtctggagattagt
gctaatgctatcagtgcgatagtagagaacaaccccgctatacagaagatggaagatgta
caacagatgatgcagcaggccactgagctggtggcagacctgaacgagaggctgaacgtc
tctgaggattccctgtcccgtctcgttgtcaatgccaatgacaccgaggccagtctggac
gcactgagaaagcaggcccaagagctagagagaacagtcacagacattcgagaccacata
aagactgtgaagaactctaacatagagggagcgatggacaccatcaccaaggcccacttg
gagtctaagagggcggagatccgtgccaatcagaccaccagttaccccgacaacactttg
gaacagtcggctacactacggcgtgaagcggaggccagactgagccagaaccaggcggag
tttgacctgagacaacagaaacacacagagagactggagagtctcgccacagagctcaac
actcttgacctatcagagctcagcaagcagacatgtggagcagctgggggggaggagggg
tgtgctgcgtccccctgtggaggggtggggtgtgtgtcggaggacggcacccttcgctgt
ggtggggaggggtgtgacggtttattcacacagacacaaagcactctgaaaacagccaag
gacttcgaccaggaaatcctctccaccctgcaggaagtggacaagctctctaggatggtg
tgggagggcaaggtgcgtgcggacgaggccaagctgaatgctcaagaggtgctgctgaag
tccaaccagagtcgagatagagtggaacagagcaacgagcagctccgcagcctcatcaag
gagatacgaggcctactcactaacgaccgtgccaaagtggaggttattgaagcggtttca
aatgaggtgttggccctggagatgcccacatcgcccgagcagctggaggccctgaccaag
gagatcagagacagggtgggagccctcaccagcgtggaggacatcctcagtcagagtgcc
aatgacatacacactgcagagaggctgctggagcaggcccgcaccgccagtcaggaggtg
tctgagatgaaggagacagctgccctggtgaaggaagctctggaaacgactgagcgtgct
cagaatgctgccatcgatgccgtcaaacaggcccacaacaacaccaggggaacacttgac
ctcatcacatctgtggagtcggagacggcggagtcggagctgtgtctgagtaacgccaca
ctgcgtctgctgcagctggagagagacgtgactctgctgagagagagcagcctgggcacc
agccaccacacacagcacactgagagtctgtctgagaccgctaggcaggacgcagagcag
gccctgcaggagtttgacttggaggtgaagggtaaatacagtgttgtggagggcttggta
gtgacgaaggcagagggcgtgtctgatgccaggaagagggcggagctactgcagcaggag
gccaaggagttgctcacccagtccagtgtaaaactacagagattcagagagttggagagg
tcgtatgcggccaaccagcgtactctggaggccaagacagttcagctggccgggctggag
aaaacggcacgccagctgctcaatgacatcagccagaaagtaatggtctacagcacctgt
tcttag
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