KEGG   Oncorhynchus keta (chum salmon): 118392858
Entry
118392858         CDS       T09424                                 
Name
(RefSeq) RNA-binding protein MEX3B
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
oke  Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:oke00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oke03019]
    118392858
   04121 Ubiquitin system [BR:oke04121]
    118392858
Enzymes [BR:oke01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     118392858
Messenger RNA biogenesis [BR:oke03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     118392858
Ubiquitin system [BR:oke04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    118392858
SSDB
Motif
Pfam: KH_1 KH_Vigilin zf-C3HC4_3 KH-I_KHDC4-BBP KH_2 KH_DEAH11_2nd zf-C3HC4 Prok-RING_4 zf-RING_5 zf-P11
Other DBs
NCBI-GeneID: 118392858
NCBI-ProteinID: XP_035640725
LinkDB
Position
14:12128042..12132972
AA seq 600 aa
MPSSTSLLDTEETEPEIPPLVVHAFGDIGLDDHYRHTEQPESLLHPRQVSHFNVLGAVLD
LQPIQHHHPTPTEEDEERANEDVLGEDDFNKTLLVQAQVSGLGSVMLPGMDTPETLLLYN
DFDHGTLQQATGMMILPPVYGEPGYEVETSLLMRRKSVNTTECVSVPSSEHVAEIVGRQG
CKIKALRAKTNTYIKTPVRGEQPMFVVTGRKEDVVMAKREILSAAEHFSLIRASRNKAGS
VAAAGPGLPAAPSLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP
VFEVTGMPENVDRAREEIEAHIAIRTGNCVEIPGDGNDFHYNGTDVSFEVGSCGAWLQSN
PAAPATAQRTGNCGVRMTANYRNDSSSSLGSGSTDSYYGGGGNRMADFSPTSPFVNNNNN
VGASFWFEETLLPLASEELAALGSPGFDPLAITTAAPAPQPQVVWSHLEQGVQLLGGRQA
PVRDSQSGTPHLSPSFQEALEHPMAQRVQRVSLSVSESQKFPVYGPTFSSSSDSSSSPPD
SCRGGQECIRCLESEIIAALVPCGHNLFCIECANRICQSPEAICPVCQAPVTQAIRLSLP
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgccaagtagcacatctttgttggacaccgaggaaactgagccggagatcccgccacta
gttgtgcatgcattcggcgacataggcctggatgaccactacagacacacggaacaaccc
gagagccttttgcatccacgccaggtctctcatttcaatgtgcttggtgccgtgctggac
ctgcagcctatacagcaccaccatccgacaccgacggaagaggacgaagaacgagccaac
gaagacgtgttgggagaggatgatttcaacaagacgctgcttgtgcaggcccaagtctcg
ggactaggctctgttatgctacctggaatggatacgcccgagacactcttgctgtacaat
gactttgaccacggcacactacaacaggctacgggaatgatgattttaccgcctgtgtat
ggagagcctggctatgaagttgagacatcgctgctcatgcggaggaagagtgtgaacaca
acagagtgtgtctcggtgcccagttcagaacatgttgccgagattgtcggtagacaaggt
tgcaagatcaaggcattgcgagcaaagaccaacacctacatcaagaccccagtgcgaggg
gagcagccgatgttcgtggtgacagggcggaaggaggatgtggtcatggccaagagggag
atcctctcggcggctgagcacttctccctcatccgagcctcccggaacaaggcaggttcg
gtggctgcagcagggccagggctacctgctgcaccttccctacctggtcaaaccaccatc
caggtgcgtgttccctaccgcgtggtgggactggtggttgggcccaagggggcgaccatc
aagcgcatccaacagcagacacacacttacattgtcactcctagccgagacaaagagcca
gtgtttgaggtgactggcatgcctgagaatgtggaccgagcgcgagaggagatcgaggcc
cacattgccatacgcacaggcaactgtgtggagattccaggagacgggaacgacttccac
tacaacggcactgacgtcagcttcgaggtgggaagctgtggggcgtggctgcagtcgaac
ccagccgcacctgccactgcccagcgcaccggcaactgcggtgtgcgcatgactgccaac
taccgcaacgacagctccagctctctgggcagtggctccactgactcctactatggcgga
ggggggaaccgcatggccgacttcagccccaccagccccttcgtcaacaataacaacaat
gttggggccagcttctggtttgaggagactctgctccccttggcatctgaggagctggca
gcactgggatctcctgggtttgaccctctggccatcaccacagctgctcctgcaccgcag
ccacaggtggtgtggagccacttggaacagggtgtccagctgttgggtggacgccaggcc
cctgtccgagacagccaatccggcacacctcacctctccccttccttccaagaggccttg
gaacaccccatggcccagcgggttcaaagggtctccctcagtgtctcagagtctcaaaag
ttcccagtctacggccccaccttctcgtcctccagtgacagctccagctctcccccagac
tcatgcagaggaggccaggaatgcatccgttgcctggagagtgagatcatcgcagccctg
gtgccctgcggacacaacctcttctgcatagaatgcgccaaccgcatctgccagagcccc
gaggccatctgcccagtgtgtcaggcaccagtcacccaggccatacggctgagcctgccc
tga

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