KEGG   Oncorhynchus keta (chum salmon): 118393090
Entry
118393090         CDS       T09424                                 
Name
(RefSeq) splicing factor 3A subunit 1 isoform X3
  KO
K12825  splicing factor 3A subunit 1
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118393090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oke03041]
    118393090
Spliceosome [BR:oke03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    118393090
 Complex B
    118393090
 Complex C
   U2 SnRNP specific factors
    118393090
SSDB
Motif
Pfam: Surp PRP21_like_P ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 118393090
NCBI-ProteinID: XP_035641278
LinkDB
Position
14:complement(26690917..26702529)
AA seq 788 aa
MPPGPVQIVQLEPNNRADESTEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEA
RIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKGQEPSAAVPKVMQQQALQNSQQLP
QKVQAQVIHETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKE
QRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLIKLKRESENPREVLDQVRYRVEW
AKFQERERKKEEEEREKERVSYAQIDWHDFVVVETVDFQPNEQGHFPPPTTPEELGARIL
TQERYDKFGESEEVEMEVESEDEEDDEREDRDDGRPTQPDQDTQLQDMDEGSDDEEDGKA
PLPPDNPMPPPLPPTPDQVIIRKDYDPKASKPQPPAKTLDEYLISPITGERIQASKMQEH
MRIGLLDPRWLEQRDRGIRERQIEDEVYAPGMDIESSLKQLAERRTDIFGVEETAIGKKI
GEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVQEDESKEKIGPS
KPELYHHHHQSPLISSAPLLPKPSPPMNTMARAPPSMLPPVRTTLLSAVPVIPRPPMAPV
QMRLAPGQVLTPMPPMMHAPRINVVPMPQPPHMMAPRPPPMVVPTSFVPAPPVPQPPRPD
PQPPSHPPPRHDDEPVTKKMKTEDNLIPEEDFLRIYKGSVSVKVQVPNMQDKTEWKLSGQ
ALNFTVPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMNNGSVIHLAL
KERGGRKK
NT seq 2367 nt   +upstreamnt  +downstreamnt
atgccgcctgggcctgtacaaattgttcaactagagcccaacaacagggcagatgagtca
acagaggaaaccccagcaacgaaacccatagttgggatcatctatccacctcctgaggtc
cgaaacatcgtcgacaagactgccagttttgtagccaggaatggaccagagttcgaggca
aggatccgtcagaatgagatcaacaacccaaagttcaacttcctgaaccccaacgaccca
taccatgcttactaccgccacaaagtcaatgaattcaaggagggcaagggccaggagccg
tctgcagccgtaccaaaggtcatgcagcagcaggccctgcagaactcacagcagcttcct
caaaaggtgcaggcccaggtgattcatgagacagtggtgccaaaggagcctccacctgag
tttgagttcattgctgaccctccttcaatctcggcattcgacctggatgttgtcaagctg
accgcccagtttgttgctcgcaacgggcgccagttcctcacacagctcatgcagaaagaa
cagcgaaactaccagtttgacttcctgcgacctcaacacagcctcttcaactacttcacc
aagctggtggagcagtacactaagattctgatccctcccaagggacttctgataaagctg
aaaagagagtctgagaaccccagggaggtgctggaccaggtgaggtaccgtgttgaatgg
gcgaagttccaggagcgtgaaaggaagaaggaggaggaggagcgggagaaagaacgtgtg
tcctacgcccaaattgactggcatgactttgtagtggtggagaccgtggactttcagcct
aatgaacaaggccacttccccccacccacaacacccgaggagctgggagctcgcatcctg
acccaggagcgttatgacaagtttggagagagtgaggaggtggagatggaggttgaaagt
gaggatgaggaggacgatgagcgggaggaccgggatgatgggcgtcccacacagcctgat
caggacacacagctgcaagacatggatgagggttctgatgacgaggaagatggcaaggca
ccattgcccccagacaaccccatgccacccccactgccccctactccagaccaggtcatt
atccgcaaggactacgaccccaaagcctccaagccacagcctccagccaagactctggat
gagtacctcatctctcccatcacgggtgagaggatccaagccagtaagatgcaggagcac
atgcgcattgggctactggatccccgctggctggagcagagggaccggggcatcagagag
aggcaaatcgaggacgaggtttacgcccctggcatggacattgagagcagcctgaaacag
ttggctgagaggcgtactgatatctttggcgtggaggagacagccatcggaaagaagatt
ggagaagaggagatccagaagcctgaggagaaggtgacctgggatgggcactctggcagc
atggcgcgtactcagcaagcagcacaggccaacatcaccctacaggagcaaattgaggcc
attcacaaggccaagggactggtgcaggaggatgaaagcaaagagaagattggaccgagc
aagcctgagctttaccaccatcatcatcaatcacccctcatctcctctgccccccttctg
cccaaacccagccctccaatgaacacgatggctcgggcccctccttccatgctgccccct
gtacgcaccactctcctgtcagctgtgcctgtgattccacggccccccatggcccctgtg
cagatgcgcctggccccagggcaggttctaacacccatgcctcccatgatgcatgctccc
cgcatcaacgtggtacccatgccccaaccacctcacatgatggcccccagaccacccccc
atggtggtaccaacttcatttgtccctgcccctcctgtcccgcagcccccccgccctgac
cctcagccaccttcccacccacccccacgccatgatgatgagcctgtcaccaagaagatg
aagacagaggacaaccttataccagaggaggatttcctccgcatatacaagggttcagtg
tcggtcaaagtacaagttcccaacatgcaggacaagacggaatggaagctaagtggacaa
gcgctgaacttcactgtcccactcacagatcaggtatctgttattaaagtcaaaatccat
gaagccactggcatgccagctggaaaacaaaagctacagtatgagggaattttcatcaaa
gattccaactcgctggcctactacaacatgaacaacggttcagtcatacacctggcactg
aaggagagaggtgggagaaagaagtga

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