Oncorhynchus keta (chum salmon): 118394026
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Entry
118394026 CDS
T09424
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37 isoform X1
KO
K12600
superkiller protein 3
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118394026 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118394026 (skic3)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
118394026 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_19
TPR_14
TPR_17
TPR_8
TPR_11
TPR_12
TPR_9
TPR_CcmH_CycH
PPTA
ANAPC8
TPR_15
ANAPC3
TPR_EMC2
ARM_TT21_C
Loricrin
Fis1_TPR_C
HAT_PRP39_N
Motif
Other DBs
NCBI-GeneID:
118394026
NCBI-ProteinID:
XP_052317163
LinkDB
All DBs
Position
14:complement(16889593..16949496)
Genome browser
AA seq
1613 aa
AA seq
DB search
MAILIQTGKKPFTSLSSIILSKYVRYLSKNGVSLINYRHSYRYDTMSNKEVKSALKNARD
AIKNKEFKEALKHCKAALKLEKNNYNAWVFIGVAASELEQPDQAQTAYRKALELEPEQLL
AWQGLANLYEKSDQTDFKAELPKVYQKLIELYESSDKTKCYEAIRKLADIFHMEKDYFQV
ARVWRRLIQLKEGEGANKAELLQLWQQMTCLLSDSMEDHDNETQQHLIAAFEKAMVLSDN
VPGEDHRKLSADYLKCLSQLSHEECKIKEACESILALYPSQTFPLEILGAHHLKSGVCSE
DAGRCFSRLLELDPDSGLGHLGLGIRALEEGKCDDSIKYLAQGLKRMRSSLVGWCSLAQA
QLKMHRYSDCATSCSQGLKLGGTGEEALGQKLLRLRLEALVRTGDEHTADQALESLSQLS
DANNDPVLVALKGRAYLQKGQVDQVLQVSTELLNSHPDLAEGLALRGLAHIAQGHHQLAE
QSLLQAAAQSPACGEYYFLLGRLYWDMGEESRRDRSKAHTHLLKAAKLDPYLGSVFCYLG
HYYREVARDQGRARGCYKRAFELDSNDAESGAASVDLSMNEGDMDTALAVLQSVIQRATP
GSAKWAWMRRGLYHLKVGQHPQACADLQAALRADPQDWVCWECLGEAYLNRRSFTSALKA
FAKAQLLNPSSIYSLYQTAAIKQTLGKFKEAAAEYLQIIAQEDYVPALKGLGECLLSLAR
CLMEDYRDGGAIDLIQQAIQYLFRAVELRPDLSCLWKLLGDACTSVSTVAPNRARVVVPG
PLAGLQPPDQGHLLNQGHTLRVGERCYGRALKLMPESSSLWYDLGLNYYHQACLPPCLQE
MEHNTLLLLLEKALQCVKKAIMLNSSNHSYWNALGVVAMSKGLENYALAQHSFIKSVQVE
PNNVVAWTNLGALYLKKDSVELSHEAFKIAQSLEPLYVNCWIGQALIAEMVGSYDTMDLF
RHTTELRTHTEGVKGYAYWVCATLLDKSNRDSELYRYNIVQMNAVSAAQVALSKYTERIQ
TDPDAFVMLGFLNEHLQLKKQAVLAYQRAVELLQATPSVELLAFSLGNYGRALCNTGQWE
EAVHVYSSTPLEVLHDLAGLALAYCRAGLIPESISSYEKALMVTSTEKEKAYILTSLALL
QHRLGNMDSAKTLLFKCSMLKEPVPESLLCLCALGLVHGDSTLASAALTELLKQGRATGA
AVEQRCLLTCTLLALQGNYSAVQREASRAVHSNPGNPSLWALLSRLVPQYYPRKAKGGAV
AGHVACLSSMTQGKRALLYSGVNQLACGRHSGEDRSRNALKTMQRAVLLCPDDPAVWAGL
MAACHTENTACFLSGSTPGRRGLEQVLMAVVSEKVRNVEEVEQPLAQALEGWVLQQAVTG
LTSGGQLEQAEALCSQVLSVSPEHPAVVLLLRQVQCEHLLLSSAGTALPASVLEQLSSAV
SANHTSVAAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLDLYSGKMACLLRLALLALSP
CMSKVPGDEWKELVLEATTEALKLGPSPVALLVQALLHFATKMTARETRRLLERLVYFSS
QGYPETVACVARWYLLRHLHAKDDLELMDTLVDDAKASGDSRLLEFHTRLTSC
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atggcgattctcattcaaacagggaagaagccattcaccagcttgtcaagcataatacta
tcaaaatacgttcgttacttatcaaagaatggagtttcgctgatcaactatcgtcattcc
taccgttacgatacaatgtcaaacaaagaagttaaatcagctctaaaaaatgccagagat
gccataaagaacaaggaatttaaagaggctctaaaacactgcaaggctgccctgaaacta
gagaagaacaattacaatgcctgggtgttcattggtgtggccgcgagcgagctggagcaa
ccagaccaggcccagacagcctacaggaaggctctggagctggagccagagcagctgctg
gcctggcagggattagcaaacctgtatgagaaaagtgaccagacggatttcaaagcggaa
ctacccaaagtctaccagaaactcattgagctttatgaaagttcagacaaaacaaaatgt
tatgaggcgatcagaaaactggcagacatcttccatatggagaaggactattttcaggtg
gccagggtgtggcgaaggctgattcagctgaaggaaggagaaggtgctaacaaggcagag
ctgctgcagctatggcaacagatgacctgccttctctcagacagcatggaggatcacgac
aatgagactcagcagcacttaattgcagcctttgagaaggccatggttctctctgacaat
gtgcctggcgaggaccatcggaagctctcagctgactacctcaaatgcctttcacaactt
tcgcatgaggagtgtaaaattaaagaggcctgtgagtccatattggccctctatccctca
caaacattccctttggagatcctcggtgcacatcatctcaagtcaggggtctgcagtgag
gacgcaggccgttgtttctcccgtctcttggaattggacccagacagtggcttaggccat
ctgggtttgggcatcagagctctggaggagggaaaatgtgacgactccattaagtatctg
gcccaaggactgaagcgaatgcgctccagcttggtgggctggtgcagccttgctcaggcc
cagctgaaaatgcaccgatattccgactgcgcaacatcctgctcccaaggtctgaagctg
ggtgggactggagaagaggcactgggacaaaagctcctgaggctgaggctagaggccctt
gtgaggactggggatgagcacactgcagaccaagccctggagagcctctcacagctttca
gatgctaacaatgaccctgtcctggtagccttaaaaggaagagcctatttgcaaaaaggc
caagttgaccaagtgctccaggtgtccacggagctgctgaactctcaccctgacctggct
gagggactggcgctgaggggactggcacacattgcacagggacatcaccaactagcagaa
cagagcctcctgcaggctgcagcccagagcccagcctgtggagagtactacttcctgttg
gggcggctgtactgggacatgggggaggagagtcgcagggacaggagcaaggcccacacc
catctactgaaggctgccaaactggatccgtacctgggctctgtgttctgctacctgggc
cattactaccgggaggtggccagggaccagggtcgagccaggggctgctacaagagagcc
tttgagctggacagcaacgacgcagagtccggggctgcctctgtggatctgagcatgaat
gagggggacatggacactgccctggctgtgctccagtcagtgatccagagagccacccct
ggttcagcaaagtgggcctggatgagacgaggcctttaccacctgaaggtgggccagcac
ccccaggcctgtgcagatctgcaggctgctctgagggctgacccccaggactgggtgtgc
tgggaatgtctgggcgaggcctacctgaaccgccggagcttcacgtcggccctgaaggcc
tttgccaaggcccagctgctcaacccctcctccatatacagcctctaccagactgctgcc
atcaaacagaccctgggcaagttcaaagaggctgctgcagaatacctgcagatcatagcc
caggaggactatgtgcctgcactcaaaggtcttggggagtgtctgctgtccttggccaga
tgcctgatggaggactatagagatggaggagccatagacctcatccagcaggccatccag
tacctcttcagggctgtagagctgcgtccagacctgtcctgtctgtggaagttactggga
gacgcctgcacctcagtcagcactgtggcccccaacagggcccgcgttgtggtgccagga
cccctggccgggttacaacccccagaccagggccaccttctcaaccaaggacacaccctc
cgagtgggggagagatgctatgggcgtgctctgaagctgatgcctgagagctccagcctg
tggtatgacctgggtctcaactactaccaccaggcctgtctgcccccctgccttcaggag
atggagcacaacaccctgctactgctgctggagaaggccctgcagtgtgtgaagaaggcc
atcatgttgaacagtagtaaccatagctactggaacgccctgggagtggtcgccatgagc
aaaggacttgagaactatgcccttgcccaacacagcttcattaagtcagtgcaagtggaa
cccaataatgttgttgcttggacaaacctgggtgctttgtatctgaagaaagacagtgtt
gagctctcccatgaagcctttaagatcgcccagtctttggaaccactgtatgtcaactgc
tggattggacaggcccttattgcagagatggtgggcagttatgataccatggacctgttc
agacacaccacagagctcaggacacacacggagggggtaaagggctatgcttactgggtt
tgtgccactctgctggataagagtaacagggactctgaactctatcgctacaacatcgtc
cagatgaacgcggtgtctgccgctcaggtggctttgagcaagtacacagagcggatccag
acagaccctgatgccttcgtcatgctgggtttcctcaacgagcacctgcagctaaagaag
caggcagtgctggcttaccagagagctgtggagttgctgcaggcgacgccttccgtggag
ttactggccttctccctgggaaactatggccgggccctctgcaacacaggccaatgggag
gaggcggtgcacgtttactcttccacacctctagaggtgctccacgacttggctggcctg
gcgctggcctactgcagagcaggactcatcccagagagcatcagttcctatgagaaggct
ctgatggtgacctctactgagaaagagaaggcctatattctgacttctctggctctgctg
cagcacagactggggaacatggactctgctaaaacactgctcttcaaatgctccatgctg
aaggaacctgtgccagagtctctgctgtgcctgtgtgctctggggcttgtccatggggac
agcaccctggccagcgcggccctcactgagctgctgaagcagggcagggccactggggct
gccgtggagcaacgctgcttgctcacctgcaccctgctggccctgcagggcaactacagc
gctgtgcagcgagaggcctccagggctgtccacagtaaccctggcaacccttccctgtgg
gccctgctttccagactggtgccacagtattaccccaggaaggccaagggaggtgcagtg
gcaggccacgttgcgtgtctctccagcatgacccaaggaaagagggcactgctgtacagt
ggagtgaaccagctggcatgtggcaggcactctggagaagatcgcagcaggaacgccctg
aagaccatgcagagggctgtgctgctctgccccgatgacccggcggtgtgggcggggcta
atggctgcttgtcacacagagaacacagcctgcttcctttctggctccacccctggcaga
cgaggcttggagcaggtgctcatggccgtggtgtcagagaaagtacggaatgtggaggag
gtggaacagcctctagcccaggctctggagggttgggtgctgcagcaggctgtgacagga
ctgacaagtggaggccagctagagcaggctgaggccctctgctctcaggtcctgagtgtg
tctcctgagcaccccgctgtagtcctgctgttgaggcaggtgcagtgtgaacacctcctc
ctgtctagtgccggtactgccctgccagcttctgtcctggagcagctcagcagtgccgtc
tcagccaatcacacctcagtggccgcctggcattggctggcggaggtgtatcgtacccag
ggtctgctggtacaggcagtaatggcctacagacaaagcctgcagctggcctcccagctt
gacctctacagtgggaaaatggcatgtcttctgcgcctagccctgctggccctcagcccc
tgcatgtcgaaagtccctggtgatgaatggaaggagctggttctggaggcgaccaccgag
gctctgaagctgggcccctcccctgtagctctccttgtccaggccctgctacacttcgcc
accaagatgaccgccagggagacgaggcgtttgttggagaggctggtgtacttctcctcc
caaggttacccagagactgtggcgtgtgtggctcgctggtacctcctacgccacctgcat
gccaaagacgacctggagctgatggacaccctggtggatgacgccaaagccagtggagac
agcagactgctggagttccacacacggctcacctcttgctga
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integrated database retrieval system
