Oncorhynchus keta (chum salmon): 118394071
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Entry
118394071 CDS
T09424
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118394071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118394071
03041 Spliceosome [BR:
oke03041
]
118394071
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
118394071
Spliceosome [BR:
oke03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118394071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
118394071
NCBI-ProteinID:
XP_052317564
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All DBs
Position
14:34896189..34913166
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AA seq
683 aa
AA seq
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MSDALKKRKSKVLRSETGTPEGKCGRGEGDQDIRVYSEEVELDGRDPEEDYQQYKLTCEA
LAKLMNDIQELKANGAKDGCVEVEEKRMQSCIHFMSLKKLNRLAHMRLKRGRDQTHEGKQ
RVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSVDEFYQEAPPEISRTPLTKD
DPHQLTLARLDWELEQRKRLAEQYKESLSSKEKIQKGIEVKKEHLSSLQPGLNAIMQASL
PVQEYLSMPFEQTQRQTEIARHLPPSLYVLLVQASAYGQACDKSLSVSISGDVDEAKALS
KPPEDSQDDDSGDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLKCKDGSV
LHLFNYYLMNLNIMTVKAKVSTATDLTGAISAGELLNSDTLLNCLYANDQGRETPNPANR
YQFDKVGISSFGDYVAELGHPYLWVQSLGGLQFPSDAPEGLRAGSSLSASHMESTMKLLR
GRVQSRLALHKQFSSLEHSIVPVSTECQHLFPAKVLSRLARWTTMSHQEYTNLSFTQHVS
DAGLARETDLFFMAVVERGTARLQAAVVLNPRYPEVSPLFALSLSWKGECSGRTDDNLRA
MESEVNVFKSELQGPRPGHQLLTNQVARLCVCLDVYLETDGQDDSVEGPREFLREKMCLR
TVRGPNRLKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgccctgaagaagcgcaagtcgaaagtgctccgcagcgagacgggcacaccg
gaggggaaatgcggccgcggagaaggggaccaggacatacgtgtgtacagtgaggaggtg
gagctagatggcagggaccctgaagaggactaccagcagtataaactgacctgtgaagct
ctggccaaactgatgaacgacatccaggagctgaaagccaacggtgccaaggatgggtgt
gttgaggtagaggagaagaggatgcagagctgtatccactttatgagcctgaagaaactc
aaccgcctggctcacatgagactgaagagggggagagaccagacacacgagggcaagcag
agagtggatgtgttgcacctgcagctccagaacctgctttatgaggtcatgcacctgcag
aaggagatcagcaagtgtctggagttcaagtctaaacatgaggagatagatctggtgagt
gtagatgagttctaccaggaggccccccctgagatctcccgcacccccctcaccaaggac
gacccccaccaactcacactggccaggttggactgggaactggagcagaggaagaggctg
gctgagcagtacaaagagtctctgtccagtaaggagaagatccagaaaggcattgaggtg
aagaaggaacacctgagttctctacagcctggactcaacgctatcatgcaggcatccctc
ccggttcaggagtacctgtcaatgccgtttgaacagacccagagacagacagagatcgcc
cgccaccttcccccctctctctacgtcctcctggtacaggccagcgcttacggacaggcc
tgcgataagagcctgagtgtgtccatcagtggagacgtggacgaggccaaagctctgtct
aaacctccagaggactcccaggatgatgattctggtgactctgatgcagaggaggagcag
gagaagacgaagaggaggcgacctactacaggtggtcagctggatgataagagacgtgag
atgctgaagagacaccctctctctctttgcctggacctcaaatgcaaagacggcagtgtg
ctgcatctgttcaactactacctgatgaacctgaacatcatgactgtcaaggccaaagtc
tccaccgccacagacctcactggagccatcagcgcaggggagctgttaaattctgacacg
cttctcaactgcctgtatgctaatgaccagggccgcgagacacccaaccccgctaaccgt
taccagtttgataaagtggggattagttcgtttggagactacgtggcagagttgggtcat
ccctacctgtgggtgcagagtctaggaggactgcagttcccaagtgatgccccagagggt
ttgcgtgcaggcagttctcttagtgccagtcacatggagagcaccatgaagctgctgaga
ggacgagtccagtcccgcctggccctgcacaaacagttctcctcactagagcacagtata
gttccagtgtccacggagtgccagcacctgttccctgctaaggttctctcccgcctggct
cgctggacaaccatgtcacatcaggagtacacaaatctgtcgttcacgcagcatgtgtca
gatgcaggtctggctcgggaaacggacctgttcttcatggctgtggtggagagaggaaca
gctcgtcttcaggctgcagtggtgttgaacccccgttatccagaagtctctcctctgttt
gctctttcactcagctggaagggcgaatgcagtggacgtacagatgacaaccttagagcc
atggaaagtgaggtgaatgtgtttaagtcagagctccaggggccccgcccagggcaccag
ctgctgaccaatcaggtggctcgtctctgtgtctgtctggacgtatacctggagaccgac
ggacaagatgacagcgtggagggaccacgggagtttctcagagagaagatgtgtctacgc
accgtaaggggtccgaaccgtctgaagccgttcaagtacaaccacccccagggcttcttc
agtcaccgctga
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