Oncorhynchus keta (chum salmon): 118394541
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Entry
118394541 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoprotein TPR-like
KO
K09291
nucleoprotein TPR
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118394541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118394541
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118394541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
GAS
Fez1
ERM_helical
Motif
Other DBs
NCBI-GeneID:
118394541
NCBI-ProteinID:
XP_052319480
LinkDB
All DBs
Position
15:17272028..17295198
Genome browser
AA seq
2557 aa
AA seq
DB search
MAAVLLQVLERTELNKLPKAAQNKLEKFLTDQKNEIESLKTQHERFKADCEQQYFDVEKR
LAESQEQIVSHTRNYQTLKEENTKLIEELNNLKGVDVESSEEKESQQPSKAKYEIEAERR
ELARLLEKRTQDVENLTEDVKRLNDKLVETNTAKIDLQLKLDEIQSSEVSIQHREKRMEQ
EKELLQNQNTWLNSELKTKTEELLSVSREKGKEILELKCSFECKKDEVTRLQTQVTNLKK
SSENLQKRVEDLMTKLKEAKDYHSTMEEKYRNEQNAHIKLSNLYKGSASDAESKNEELSR
AVEELHKLVKEAGDARQNMEKKLTDMEGSKSKQEAELKEKFKKMELENANLRASDKKRSM
PVLTEEELDSMCPTAAAVAKIVKPGMKFMELYNAFVDIQDQLLVEKQENRRVTRVLDEIV
QEVEEKAPILKRQREEYESMQRSMNSLCAKLEQARTEIHSLQKETDEAKKHCSNLEKDNQ
HSERELEDMSQQVRVLLVELEEARGNPVVREETMNLSSSSEIINPRQVSFRSVEELQRQN
QSMLARLRELGEKMEREQTEANSARVTQLEQQLEKVQKELEIIKEQRNQQKQLADSNGRQ
RDMYRILLSQSTGFNLPPQGPTQEAAPQMYTPSRPSPPPTRSTPMRASAAESSQTTQAKA
ALKQLNDSFTTYKNEKAVNDRMLNEQNEKLQEQLSAFRSQKAKLSTQLEFASKRYEMLQE
NVNGYRREIAALHDKSQKMAATAQKHEQIIHTMTQDLRAANEKLALAEVRGENMKKERDM
LKSAESRLNQEKEAMMAEQRNQNLLLTNLKSIQLTMERTETETRQRLNSQIERLERELTQ
FKKKLAEEVEQRHMLGRNQDAQLLEAKKQLEAQCALHQKTKELLKNAEQQANLLKQQLSH
AESQNQGSGLGQGQSLGQMNPRAPIRAPLRAPSQTQSQEAQVKLQSELEEVRGRLQQAEK
QINDLQERLQNASTNVEQYRTVVLSLEESLSKEKQARSPVETRLKEAQEFQRGLEKKLVE
AEKEKQELREEKRKAMDIVEKQVNELKRTMKNLQSELQEAEERKAAAITQEQKAMQDSLQ
QGKLAAEAQNKYERELMLHAADVEALQAVKKQGLQGNQSRKQLEDKAKQTTTQLQEARTN
WYQLEKKLKEDLSKQQKRADELQKQNGLLHQQMESLGAKMAATVQQQQQASRESSLNLSF
SEEGKSQEQILEILRFVRREKEIAETQFEVAEVETLRYKQQVEHQDRELKELQESLNAER
EKLQLTAKTMAQHDEKMKRMENLNVLVETNKMLKEERERLEQELHQTQAKVRKLEADITP
LQDSNSELSEKNGMLQAEKKLLEEDSKRWKARTQQLVSQQKDTDQEENKKLHSEREAHLK
RIQQLSEETGRLKAEVARTHASVITAQSQAQNLKENLGKVTTERDAKHLDIQEKCKTITQ
VKKIGRRYKTQYEELKVQHDKLVAEAAAKPAQEEVLQAVQQAQQQAVQQAQQQAQQAQQA
SAQEIQSLKDSLSQAETKVKDLEGQLKNVQETVNERNTEMGRLKQELTRLQEQSTQAQGT
QSEVTRLKQELTRLQEQSAQGTQGEVTRLKQELTRLQEQSTQAQGTQSEVTRLKQELTRL
QEQSTQAQGTQGEVTRLKQELTRLQEQSTQAQGTQSEVTRLKQELTRLQEQFTQAQGNQG
EVTRLKQELTRLQEQSTQAQGTQGEVTRLKQELQEKTAQEESLRQQMADKEEKTKKVFMG
AKQKINQLNIAKEHLTKEVEELKQQREEQEVRLSALKSQYEGRLHRQDREIRELRDHRDE
QPQRDESQDQGKNKTQEQQQRAPDQRQINQRTSQAADRGSGSSGSSEQPPTANIKPTTVS
GGAPSKPSPIPGNKSTPRASIRPMVPITMPTPTATVMPHTQSESQEVLQSSESGTPVEHV
SVFGSTSGSVRSTSPSVQNITHSQFQPISSQATAFVQPTQQQQAPPTAELAIQETEAGPS
GQVERPSTSTAVFGSAIATGGSAGPKRAREVELEARAESADMALENPDEPPIPKKLRIIQ
RVGLEEENEEGTDGEAEGSGENQETPDGSQELPDVSFPVLGEVEEEDDGVSQSVPSDHQV
TPQPSDTQDSSEERQPDIIIIDTDSSSREEEEEEAEQYEEEVEEEKDDDDDDEDQGMGRE
ESNEGSGDANEPFEGDETGPETSEPASENEESMGAIDSTSQKQADSQSGEGSSSTTESFP
MAMSDPPKELLQPTASTTSTFSFSTSPFSPSSSLRLPQSVPRRPPHPLPPRLYIQPPGPE
LGLGPPPTQRLSAPIRRQSVGRGPQLTPGIGNMQHFFDDDDRMVPSTPTLVVPHRTDGFA
EAIHSPQVAGVPRFRFGPPEDMPQASSSHSDLGQLASQGGLGMYESPLFLAAHDEESGGR
SVPTTPLQVAAPVTLFNESHPSDAQDMASQSVPMVTTSTSHHGLAVPGGEAMPGDDGDEV
FMEADSEGSGEASMDSQAEMDSAQPSDDASLPSTSQEPTSSSADTSSSVQPKPSGRPLAQ
HTLPMRTANRGRALIRRGGMGFLRAGRGPFGRGNLPR
NT seq
7674 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagttctgcttcaagttttggagcgtacagagcttaataaactccctaaagct
gctcaaaacaaattagaaaagttccttactgaccagaagaatgagatcgaatccctcaaa
acgcagcacgagcggttcaaagcggattgtgagcagcaatactttgacgttgagaagaga
ttggcagagagtcaggagcagattgtgtctcacacccggaattaccagactctcaaagag
gagaataccaaactcatcgaagagctgaacaatctgaaaggtgtggatgtggaatcgtca
gaggagaaggaatcacagcagccgagcaaagccaaatatgagattgaggccgaaaggcgg
gaactggctcgtctgcttgaaaagagaactcaagatgtggaaaatctcaccgaggatgtc
aagcggctcaatgacaagctggtggagaccaacacagccaaaatagatctacaactcaaa
ctggatgagatccaatcttctgaggtctccattcagcaccgtgagaaacgtatggagcag
gagaaggagctactgcagaatcagaacacgtggctgaactctgaactgaagaccaagaca
gaggagctgctatcagtctccagggaaaagggcaaggagatcctggagctcaagtgcagc
tttgagtgcaagaaggacgaggtcacaagacttcaaacccaagtcactaatctgaagaag
agcagtgagaacctgcagaagcgagtggaggacctgatgacaaaactgaaagaggctaaa
gactatcatagcaccatggaggagaagtaccgcaatgagcagaatgcccacatcaagctc
tccaacttgtacaaggggtcagcatcagatgcagagtccaagaacgaggagttgagcagg
gccgtggaggagctgcacaagctggtgaaggaggctggtgatgcgagacagaacatggag
aagaagctgacagacatggaggggtcaaagagcaaacaggaggctgagctgaaggagaag
tttaagaagatggagctggagaacgccaacctgcgtgcctcagataagaaaagaagcatg
ccagtgctcacagaggaagagttggactccatgtgtccgaccgcagctgctgtggccaag
attgtcaagcctggaatgaagttcatggagctgtacaacgcattcgtggacatccaggac
cagttgctcgttgagaagcaggagaaccggcgtgtgacgcgcgtgctggacgagatcgtg
caggaggtggaggagaaggcgcccatcctaaagcgccagcgggaggagtatgagagcatg
cagaggtccatgaacagcctctgtgccaaactggaacaggccaggacggagatccacagc
ctgcagaaagagacagatgaggccaaaaagcactgctccaacctggagaaggacaaccag
cactctgagagagagctggaggacatgtcccagcaggtgcgcgtcctgctagtggagctg
gaggaggcgcgtggcaacccggtggtccgcgaggagacgatgaacctgagcagcagctct
gaaatcatcaacccacgccaggtttccttccgcagtgtggaggagctgcagcggcaaaac
cagagcatgctggcacgtctccgggagctgggggagaagatggagagagagcagaccgag
gccaattctgcacgtgtgacccagctggaacagcagctagagaaggtccagaaggagctg
gagattataaaggagcagagaaaccagcaaaagcagctggctgactccaacggccgccag
agagacatgtaccgcatcctgctatcccagagcaccggcttcaacctcccaccacaaggt
cctacacaggaggcagccccccagatgtacacccccagccggccctccccccctcccacc
aggtccacccccatgagggcttcagccgctgagtcttcccagaccacccaggccaaggct
gctctcaaacagttgaacgactccttcaccacatacaagaatgagaaggcggtgaacgac
aggatgctgaacgagcagaacgagaagctacaggagcagctgtctgcgttcaggtcccag
aaggccaagctctccacacagctggagttcgcctccaagagatacgagatgctgcaggag
aatgtaaacggctacaggcgggagatcgctgctctgcacgataagagccagaagatggcc
gccacggctcagaaacatgagcagatcatccacaccatgacccaggatctccgggcagcc
aatgagaagctggccttggcagaggtgcgtggtgagaacatgaagaaagagagagacatg
ctgaagtcagcagagtccagactgaaccaggagaaggaagccatgatggctgagcagcgc
aaccagaacctcctgctcaccaacctcaagtccatccagctgacgatggagcgtacagag
accgagaccaggcagcgtctgaacagccagatagagagactggagagagagctcacccag
tttaagaagaaactggctgaggaggtggagcagaggcacatgctgggccgtaaccaagac
gctcaactgctggaggccaagaagcagctagaggcccagtgtgccctgcaccagaagacc
aaggagctgttgaagaatgctgagcagcaggctaaccttctgaaacaacagctcagccat
gctgaaagccagaaccagggttcaggtctgggccagggtcagagcctgggccagatgaac
ccccgggcacccatcagagcaccgttaagagctccatctcagacccagtcccaggaggcc
caggtcaagctccagtcagaactagaggaggtgcgcgggcgtctgcagcaggccgagaag
cagatcaacgatctgcaggagcgcctgcagaacgcgagcactaacgtggagcagtaccgc
actgtggtgctcagcctggaggagtccctcagcaaagagaaacaggctcgttctcctgtg
gagactcgtctaaaggaggcccaggagttccagcgtgggctggagaagaagctggtggag
gctgagaaggagaaacaggaactccgtgaggagaagaggaaggccatggatattgtggag
aaacaggtgaatgagctgaagaggaccatgaaaaacttgcagtcagagctgcaggaggcg
gaggagaggaaggctgcagccatcacccaggaacagaaggccatgcaggacagcctgcag
cagggcaagctggcagcggaggcccagaacaagtacgagcgggagctgatgctgcatgcg
gctgatgtggaggcgctacaggcggtcaagaaacaaggcctgcaggggaaccagagcagg
aagcagctggaggacaaggccaaacagaccaccacccagctacaggaggctcgcaccaac
tggtaccagctggagaagaaacttaaggaggacctgtccaagcagcagaagcgggcagac
gagctgcagaagcagaatggcctgctgcaccagcagatggagagcctgggagccaaaatg
gccgccacagtacagcagcagcaacaggctagtagggagagcagcctcaacctgtccttc
agcgaagaggggaagtctcaggaacaaatcctggagatcctcaggtttgtgcgtcgtgag
aaggagattgcagagacacagtttgaggtggccgaggttgagactctgcgctacaaacaa
caggttgaacaccaggaccgagagctgaaggaactacaagagagcctcaacgctgagaga
gagaaactacagctgacagcgaagactatggcccagcacgatgagaaaatgaagaggatg
gagaacctaaacgtgctggtggagaccaacaagatgctgaaggaggagagggagcgactg
gaacaggagctgcaccagacccaggctaaagtgcgtaagctggaggcggacatcactccc
ctgcaggactccaactctgagctgagtgagaagaatggcatgctgcaggctgagaagaaa
ctgttggaagaggacagcaaacgctggaaggcccgcacacagcaactggtgagccagcag
aaggacacagaccaggaggagaacaagaagctgcactctgagagagaggcccacctcaaa
cgcatccagcagctctctgaggagactgggagactgaaggctgaggtggccaggacccat
gcgtcggttatcacagcccagagccaggcgcagaacctgaaggagaatctgggcaaggtg
accactgagagggatgcgaagcacctggacatccaggagaagtgcaagaccatcacgcag
gtcaagaaaatcggacgacgctacaagactcagtatgaggagctcaaagtgcagcacgac
aagctggtggcggaggcagcagccaagccagcccaggaggaggtgctgcaggctgtgcaa
caggcccagcagcaggctgtgcaacaggcccagcagcaggctcaacaggcccagcaggcc
tctgcccaagagatccagagcctgaaagactccctcagccaggctgagaccaaggtcaaa
gacctggaaggacaactgaaaaacgtacaggagacggtgaatgagcgcaacacagagatg
gggcggctgaaacaggagctgacccggctccaggaacagtctacccaggcccaggggaca
cagagtgaagtgacccggctgaaacaggagctgacccgcctccaggaacagtctgcccag
gggacccagggtgaagtgacccggctgaaacaggagctgacccggctccaggaacagtct
acccaggcccaggggacacagagtgaagtgacccgactgaaacaggagctgacccggctc
caggaacagtctacccaggcccaggggacccaaggtgaagtgacccggctgaaacaggaa
ctgacccggctccaggaacagtctacccaggcccaggggacacagagtgaagtgacccga
ctgaaacaggagctcacccggctccaggaacagtttacccaggcccaggggaatcagggt
gaagtgacccggctgaaacaggagctgacccggctccaggaacagtctacccaggcccag
gggacccagggtgaagtgacccggctgaaacaggagctgcaggagaagactgctcaggag
gagtcgctacggcaacagatggccgacaaggaggagaagaccaagaaggtcttcatgggc
gccaagcagaagatcaaccaactcaacattgcgaaggagcatctgaccaaggaggtggag
gagctgaagcagcagcgggaggagcaggaggtgcgtctgagtgctctcaagtcccagtat
gagggccgtctgcaccgacaggaccgagagatcagggagctccgagaccaccgtgacgag
caacctcagagagacgagtcccaggaccaagggaaaaataagacccaggagcagcagcag
agagctccagatcagaggcagatcaaccagaggacttcccaagctgcagacaggggaagt
ggttcttccggctcttcagagcagccccccactgccaacatcaaacccacaacggtgtcg
ggcggtgcccccagtaaaccttcccccatccccgggaacaagtccacccccagggccagc
atccgacccatggtgcccataaccatgcccacccccacggccactgtcatgccccataca
cagtctgaaagccaggaagtgctgcagtcctctgagagtggaacccccgtggaacacgtg
tctgtgttcggcagcaccagcggctcggtccgctccaccagccctagcgtccagaacatc
acgcactctcagtttcagccaatcagcagccaggccactgccttcgtccagccaacccag
caacagcaggccccgcccaccgctgagctggccattcaggagacagaggcaggccctagt
ggtcaagtggagaggccctccacttctacggccgtatttggctcagctattgctacaggg
ggctctgctgggccaaagcgtgcccgcgaggtggagctggaggctcgggcagagagcgcc
gacatggccctggagaacccagacgaaccacccatccccaagaagctccgtatcatccag
agagtgggactggaggaggagaatgaagagggcactgatggagaggctgaggggtcaggg
gagaaccaggagactccagatggcagccaggaactaccagacgtgtcctttcctgtactg
ggagaggtggaggaagaggatgacggggtgtcccagtctgtcccctcagaccaccaggtg
accccccaaccctctgacacccaggactccagcgaagaacgccagcctgacatcatcatc
atcgacacagacagctccagtcgagaagaagaggaggaagaggcagagcagtatgaggaa
gaggtggaggaagagaaggatgatgatgatgatgacgaggaccaggggatgggaagagag
gagagcaacgaggggagcggagatgccaacgagccgtttgaaggagacgagacaggccct
gagacctcggagcctgcctcggagaatgaggagagcatgggagctatagactccacctcc
cagaaacaggctgactcacaaagcggtgaggggagcagcagtaccaccgaatccttcccc
atggccatgtctgacccccccaaagaactactacagcctaccgctagtactaccagcact
ttctccttctctacctcccccttctccccctcctccagcctgcgcctgccccagtctgtc
ccccgccgacccccacaccctctgcccccacgcctctacatccagccccccggccctgag
ctgggcctgggacctccacccacacagaggctgtctgcgccaatccgccggcagtctgta
ggcagaggaccccagctcacgcctgggataggcaacatgcaacacttctttgatgacgat
gaccggatggtccccagtacgcccacgctggtggtgccccaccggactgatggctttgct
gaggccatccattctccacaggtagcaggagttcccaggttcaggtttggtcctcctgaa
gacatgcctcaggccagctcgtcccactctgacctcggacagctcgcctcacaaggaggt
ctggggatgtacgagagtccactgttcctggctgctcacgacgaggagtctggagggagg
agtgttcccaccacgcccctgcaggttgctgccccagtgactctcttcaatgaatcccac
ccctctgatgcccaggacatggcatcccagtctgttcccatggtgacgacatccacgagc
caccacgggctggcagtccccggcggagaggccatgccaggagatgacggtgacgaggtg
ttcatggaggcagatagtgaagggagtggtgaagcgtccatggatagccaggctgagatg
gactctgcccagccgtcagacgatgccagtctgccctccacaagccaggagcccacctcc
agctctgccgacaccagcagtagtgtgcagcccaagccctccggccgccccttggcccag
cacactctgcccatgagaacagccaacaggggcagggcgctcatccgcagaggaggtatg
ggcttccttcgagcaggaagaggccccttcggtagaggaaacctaccccgctaa
DBGET
integrated database retrieval system
