Oncorhynchus keta (chum salmon): 118394644
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Entry
118394644 CDS
T09424
Name
(RefSeq) tenascin-N-like isoform X1
KO
K06252
tenascin
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04510
Focal adhesion
oke04512
ECM-receptor interaction
oke04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118394644
04518 Integrin signaling
118394644
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118394644
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118394644
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118394644
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
Fn3_Dep-1_3rd
Fn3_PBP1
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
EGF_2
EGF_Tenascin
EGF_PEAR1L
DUF7949
Motif
Other DBs
NCBI-GeneID:
118394644
NCBI-ProteinID:
XP_052319690
LinkDB
All DBs
Position
15:complement(24623308..24661742)
Genome browser
AA seq
1384 aa
AA seq
DB search
MTTRLHWLLRALCLIGILCTVTTTYVTEDSPAPAEKGVTFSHIYKIDLTKSPGCKLALQT
IPHQQDQGLGLQELEGGPTLEGDKDIVFRHQINLKTSKCDCDESERFKSLLYRVNGLEEE
VEHLKSRCSQGFCGGKGGGAGGVDTSCSGHGTYQHDTCSCQCNSGWEGPDCSISTCPDEC
NDHGRCVDGKCVCLAGYMGSDCRQLMCPGDCNDKGYCVDGKCVCFSHFTGEDCSEQKCSP
DCVHGTCVNGMCICDEGFFGDDCSAVFSPNGLRLVRMTDVSLLVEWQAVTAAEYYVLAWH
PEGNEAELERVTVPNTDTSYLITGLRPGVTYIVQVYAVIKEIQSEGDRIEATTVVSGIDG
IRVLGQTEDSIQVDWQNPAAPLDHFRLTHANPDGQEEEQLVPMNAEARTTNTIVGLQPGT
EYLITVQGIKGTIEGKASFVTGVTDLDAPTNLLTKEVTEDTATVEWQKVQAEIDGYVISY
SSAEGSSGEIPVGADSSSYRLTGLRPGVIYTVYIWAVKGSRVSRKSSTEAETDLDAPANL
LTREVTEDTTTVTWEKVQAEIDSYVISYSSAEGSSGEIPVGADSSSYRLTGLRPGVIYTV
YIWAVKGSRVSRKSSTEAETDLDAPTNLLTREVTENTADVSWDRPLGDIDGYMISYSSAE
GSSGEIPVGADSSSYRLTGLRPGVIYTVDIWAVKGSRVSRKSSAIAETDLDAPTNLLTRE
VTEDTADVSWDRPLADIDGYVISYSSAEGSSGEIPVGADSSSYRLTGLRPGVIYTVYIWA
VKGSRVSRKSSTVAETDLDAPTNLLTREVTEDTADVSWDRPLADIDGYMISYSSAEGSSG
EIPVGADSSSYRLTGLRPGVIYTVYIWAVKGSRVSRKSSAVAETDLDAPTNLLTREVAED
TADVSWDRPLADIDGYMISYSSVEGSSGEIPVGADSSSYRLTGLRPGVIYTVYIWAVKGS
RVSRKSSTVAETDLDAPTNLLTREVTEDTADVSWDRPLADIDGYMISYSSAEGSSGEIPV
GADSSSYRLTGLRPGVIYTVYIWAVKGSRVSRKSSTPAETEIDSPKNLKASDVKLDAATL
TWTAPLARIDGYILTFRAEDGTLKTFEKKLREGESRFAMSGLEMGKNYIVTLLAYRGAKK
SRVIETTFKTVGLLHPFPMDCTQIKTNGNMASGIYTIYINSDRTKPMDVYCDMDTDGGGW
VVLQRRNNGQMDFMKRWRQYMAGFGNMTDEFWLGLDNIYELTNTPTQYELRVDLGVGSEK
AYAVYDNFKIAPAKQKFKLTIGKYRGTAGDAMNYHQGRPFSTVDNDNDIALGNCALTHRG
AWWYKNCHLANLNGKFGDNRHSMGVNWEPWKGHLMSLDFTEMKIRPVGAARKRRSLSSRT
APRK
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgactactagacttcactggctcttaagagccctctgcctgataggcatactgtgcact
gtcactaccacatatgtgacagaagattctccagcccccgctgagaaaggagtcaccttc
agccacatctataagatagacctgaccaagagccctggctgtaaattggccttgcagacc
attcctcaccagcaggaccagggattaggtctgcaagagctggaggggggccctactctg
gagggggacaaggacatagtattcaggcaccaaatcaacctcaagacctcaaagtgtgac
tgtgatgagtcggagcgcttcaagtctttgctgtacagagtcaacgggctggaggaggag
gtggaacacctgaagagtcggtgctcccagggcttctgtggtggcaaaggtggtggagca
ggaggtgtggacactagctgtagtggccacgggacctaccagcacgacacctgcagctgc
caatgtaactctggctgggaaggcccagactgctccatctccacctgtcctgatgagtgc
aacgaccatgggcgctgtgtggacgggaagtgtgtgtgccttgctggctacatggggagt
gactgcaggcagctgatgtgcccaggtgactgcaacgataagggatactgcgtggacggg
aagtgtgtgtgcttcagccacttcaccggcgaagactgcagcgaacagaaatgcagtcct
gactgcgtccacggtacctgcgtgaatggaatgtgtatctgtgacgagggcttcttcggg
gatgactgctctgcagtgtttagccctaacggcctgcgtctggtcaggatgactgatgtc
tcgctgctggtagagtggcaggcggtgacagcagcagagtactacgtcttggcctggcac
cctgagggcaacgaggcagagctggagcgggtcaccgttcccaacacagacacctcctac
ctgatcaccggtcttaggccgggggtcacctacatagtgcaggtgtacgctgtcatcaag
gagatccagagcgagggggacaggatagaggcgaccacagtggtgtctggtattgatggt
atcagggtattgggccagactgaggactctatccaggtggactggcagaaccctgcagca
cctctggaccacttcagactaacccatgctaaccctgacgggcaggaggaggagcagctc
gtacctatgaatgcagaggccaggaccaccaacaccatcgtaggactgcaacctggcact
gagtacctcatcacagtgcaaggcatcaaaggcaccatcgaggggaaagcctccttcgtc
accggggtcacagatcttgacgctcctacgaacctcttgaccaaagaagtgacagaggac
actgctaccgtggaatggcagaaggtacaggcagagatcgacggctacgtgatcagctac
agctctgctgagggctccagtggggaaatccctgtgggggcagacagcagctcctacagg
ctgactgggctgaggcctggagtcatctacacagtctacatctgggctgtcaagggctcc
cgggtcagcaggaagagctccacagaagctgagacagatctggatgctcctgctaacctg
ttgaccagagaagtgacagaggacacaacgacagtaacatgggaaaaagtccaagctgaa
attgacagctatgtgatcagctacagctctgctgagggctccagtggggagatccctgtg
ggggcagacagcagctcctacaggctgactgggctgaggcctggagtcatctacacagtc
tacatctgggctgtcaagggctcccgggtcagcaggaagagctccacagaagctgagaca
gatctggatgctcctactaacctcttgaccagagaagtgaccgagaatacagccgatgtg
tcgtgggacagacctctaggggacatcgacggctacatgatcagctacagctctgctgag
ggctccagtggggagattcctgtgggggcagacagcagctcctacaggctgactgggctg
aggcctggagtcatctacacagtcgacatctgggctgtcaagggatccagggtcagcagg
aagagctccgctatagctgagacagatctggatgctcctactaacctcttgaccagagaa
gtgaccgaggacacagccgatgtgtcgtgggacagacctttagcggacatcgacggctac
gtgatcagctacagctctgctgagggctccagtggggagatccctgtgggggcagacagc
agctcctacaggctgactgggctgaggcctggagtcatctacacagtctacatctgggct
gtcaagggctccagggtcagcaggaagagctccactgtagctgaaacagatctggatgct
cctactaacctcttgaccagagaagtgaccgaggacacagccgatgtgtcgtgggacaga
cctttagcggacattgacggctacatgatcagctacagctctgctgagggctccagtggg
gagatccctgtgggggcagacagcagctcctacaggctgactgggctgaggcctggagtc
atctacacagtctacatctgggctgtcaagggctccagggtcagcaggaagagctccgct
gtagctgagacagatctggatgctcctactaacctcttgaccagagaagtggccgaggat
acagctgatgtgtcatgggacagacctctagcggacatcgacggctacatgatcagctac
agctctgttgagggctccagtggggagatccctgtgggggcagacagcagctcctacagg
ctgactgggctgaggcctggagtcatctacacagtctacatctgggctgtcaagggctcc
cgggtcagcaggaagagctccactgtagctgaaacagatctggatgctcctactaacctc
ttgaccagagaagtgaccgaggatacagccgatgtgtcgtgggacagacctctagcggac
atcgacggctacatgatcagctacagctctgctgagggctccagtggggagatccctgtg
ggggcagacagcagctcctacaggctgactgggctgaggcctggagtcatctacacagtc
tacatttgggctgtcaagggctcccgggtcagcaggaagagctccacaccagctgagaca
gaaattgattcgcctaagaacctaaaagcgtcagatgttaagctggacgctgcgaccctg
acctggactgctcccttagccagaatcgatggctacatcctcacattcagagctgaggat
ggcacattgaagacttttgagaagaagctgagggaaggagagagcaggtttgccatgtca
ggcctggagatgggaaagaactatattgttaccctcctcgcttacagaggagcaaagaag
agcagagtgatagagaccacattcaaaacagtgggtttgttgcacccgttccccatggac
tgtactcagattaagacgaatggtaacatggcaagtggaatctacacgatttatatcaac
agtgatcgcaccaagcccatggacgtgtactgtgacatggacactgatggcggtggatgg
gtggtgttacaaagacgcaacaatggacagatggacttcatgaagcgctggagacagtac
atggccggctttgggaacatgactgatgagttctggctcggtctggacaatatctatgag
ctgaccaatactcctacccagtatgagttgcgagtggacctgggagtgggttcagagaag
gcctatgccgtctatgacaacttcaagatagccccggcaaagcagaagttcaagctgacc
atcggcaaatacagaggaacagcaggtgatgccatgaactaccatcaaggtcgccctttc
tctactgttgacaatgacaatgacattgctcttggtaactgcgccctgactcatcgtggc
gcttggtggtacaagaactgtcaccttgccaacctgaacggcaaattcggagacaacaga
cacagcatgggtgtgaactgggagccatggaaaggccacctcatgtctcttgatttcact
gagatgaagatccggccagtgggcgccgccaggaagaggaggtcacttagcagcagaaca
gctcccagaaaatag
DBGET
integrated database retrieval system