Oncorhynchus keta (chum salmon): 118394801
Help
Entry
118394801 CDS
T09424
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118394801 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oke01009
]
118394801 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118394801 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
oke03029
]
118394801 (rb1cc1)
Protein phosphatases and associated proteins [BR:
oke01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118394801 (rb1cc1)
Membrane trafficking [BR:
oke04131
]
Autophagy
Autophagosome formation proteins
ULK complex
118394801 (rb1cc1)
Mitochondrial biogenesis [BR:
oke03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
118394801 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
118394801
NCBI-ProteinID:
XP_052319830
LinkDB
All DBs
Position
15:complement(32880759..32900058)
Genome browser
AA seq
1634 aa
AA seq
DB search
MKLYVFQVNNGSTLAFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYINYQQ
DFEDIKLKLTKLGTAVSVMANIPLLECLTRHSYKECIEKSCSTPNKDSDETEEEKSTDSV
LCPSPTKLPASFSAPGAGDSPDTAETQESSEMTDSSGLRAALQEADSPERANPLSFNVTL
LDWINVQDRPNDVESVVRKCFDSINRLDPRVIQPFLAECRDTIAKLDNQNMKAIKGLEDR
LYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLMIMLTNHR
KLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELMERVRVVDA
LSTVPQMYCLAVVEVVRRKLFIGHYREWACALVKDGKHLYETEKYKRETFGKLFRKCFLR
NRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPTEVQPFLRVPTLCDFEP
LHLHVEMLQQLVLASQAASVDEMSQTITDLLSEQRGSCSQSAQRSTAAVTPQSDNTPGTS
SPKTPSSLSLPGPSCQPLPGPTALEDLSPDSIDAQTFDFETIGHPNMDPILQQAGSLDLD
SLAESPESDFLSAVNEFVIENSPTPISDPTSPEMMVESLYSSVINAIDSKRMHDTTTLER
ENSKVATLNLSIEKYRSAAEESQANLRSVKDDLYRFRGLVLKEQRDFGFALKTMTIEVRN
MVDTIRKSEEEELREQHQAELLSVQQDHEKQLQTLAEENQVNRNIVKDVQRAMLELEGLL
EHKEKELTQLEAERQCWTEAESGHTQSLSVLEHKISDQAHEVLTVAASRDSLYNQLETLH
IEIERGQQKIRQELEGAEQVHLQELEERMRQQHQAQLDTLTRENQEAMECLATVHRVKLS
EVADRHAASLTERDGQLRDLEARATELADLRCKLEVELALKESEMEVVRLLYEEAKQGQQ
EANVRKATVEAETQSLNEQLVQVNGQLHAKNEEYEKGLAELRTLMRMEKDQCISELVGRH
EEERNQRRSELTALQQQAQDAGRSHAEQLQNLQLDLDLQTAVLRNDKEVQQSSFEEQEQH
LRTVICDLQTENDLLTKRLEQDTQAAQERLEKEESLKAAVPDAFKDFEQQKEEIEKRLLD
KIRQLENELRERQSSEREAGLSKVQTEGRGSEAGAPLSLDSALQERLQQETASLHTQLEL
LERRKDEEMQNLKTSLIAEQQTNFNTVLMREKLKKEQIISELTEELRKVTQQQEKDKGLI
EMLSEDRAIVMQEKKQLEEDLNRLRSTALVSSAYYSPSPLALEPTGAGARLGSGACPGPG
TEVGVGACSSELFPDPDRLASVAATREDDRVDSAVEASMVTVHDNILMMSEEKQRILLLE
RTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTV
GPTLYFLHSESLTALDLKPDPMFTSASGASRRPWVLGKVMEKEYCQAKKAQNRFKVPLGT
KFYRVKAVPWNKKV
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggaagcactctggcatttgacacagagctc
gctgtccaaacagtgttggacctcaaacatgccatccaggtcaaatacaagattgcaacc
cagcatcaagttctggttgtcaatggaggggagtgtatggttgcagagaggagagtctgc
agctacagtgctggcactgacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgacgatccctaaaaccaccttctctattgagaatgagatggagctc
aaggtggaggagtcactaatgatgccagcagtctttcacaccgttgcctcgcgaacacaa
cttgctgtggaaatgtttgaagtcgccaagaaactttgctctttctgcgaacgcctggtt
catgatgaacacctccaacaccaaggttgggctgctatcatggcaaacctcgatgactgc
accctgtcttatcagaagctactgtggaaatttgacacggcgtacattaattatcaacaa
gactttgaggatatcaaattgaaactgacaaaactggggacagcagtttcagtcatggcc
aatatccccctgctggagtgtctgacccgccacagctacaaagaatgcatagagaagtcc
tgctccactccaaacaaggactctgacgagaccgaggaggagaagtccaccgactcggtg
ctctgcccctcccccaccaagctacctgcatcgttctctgctccgggggcgggggactcg
cccgacaccgccgaaacccaggaaagcagtgagatgacggacagtagtgggctgagggca
gccttgcaagaggcagactctccagagagggccaaccccctgtccttcaacgtcacactg
ctggactggattaatgttcaagacaggcccaatgacgtggaatcagtcgtgaggaaatgc
tttgactccatcaataggctcgacccacgggtcattcaaccattcttagcggaatgtcga
gacacgattgccaaactggataatcagaacatgaaagccatcaaaggacttgaggacagg
ttatacgctctagaccaaatgatagcgagctgtaaaaagttggtcaatgaacagaaggaa
cttgctcagggctttctggccaatcagaagcgtgctgagaacctgaaggatacgtccgtg
ctgcctgacctgtgtctcagtcatgccaatcagctgatgatcatgctgaccaaccacagg
aagctgctggacatcaaacagaagtgcaccactgccaaacaggagctggcgaacaaccta
caagttcgtctcaaatggtgctgctacgtgatgctgcacgcggaccaggatggggagaag
ctgcaggccctgctgaggctgttgaccgagctgatggagagagtccgtgtggtggacgcc
ctcagcaccgtgcctcagatgtactgcctggccgtggtggaggtggttcgcaggaagctc
ttcatcggccactacagagagtgggcctgtgctctcgtgaaggatggaaagcatctctat
gagaccgagaagtataaaagggaaacgtttggcaagttgttcaggaaatgttttctccga
aatcggttgtttagaggacttgactcatggccccccacttcattttgcacaagaaagccc
agaaagtttgactttgagcttcccgatatttcccttggtgacctgcagtacttaaagacc
tgttgtccaacagaggtgcagcctttcctcagggttccaacactgtgtgactttgagcct
ttgcatctgcatgtggagatgcttcaacagttggtccttgcttctcaagctgcaagtgtg
gatgagatgtctcaaactatcaccgatttactcagcgaacaaagggggtcgtgcagccag
agtgctcagagatccacggcagcggtgaccccacagtccgacaacaccccagggacttcc
tcccccaagaccccctcctctctcagtctcccggggccctcctgccagcccctccctggc
cccaccgccctggaggacctgtccccggacagcatcgatgcccaaacctttgacttcgag
acaattggccaccccaacatggaccccatcctgcagcaggccggctccctggacctggac
tccctggctgagagccccgagtcagacttcttgtcggcggtcaacgagtttgtgatcgaa
aactcgcccacccccatcagcgaccccaccagcccagagatgatggtggagtcgctgtac
tcgtcggtaatcaacgccatcgacagcaagcgcatgcatgacaccaccacattagagagg
gaaaactccaaggtggctactctgaatctgagcatcgagaagtaccgctctgctgccgag
gagtcccaggccaacttgcggagcgtcaaggatgacctgtaccgcttcagaggcctggtg
ctgaaggagcagcgagactttggcttcgccctgaagaccatgaccattgaggtgcgcaac
atggtggacaccatccgtaagagtgaggaggaggagctgagagagcagcaccaggccgag
ctcctctctgtgcagcaggaccatgagaagcaacttcagaccctggcggaggagaaccag
gtcaaccggaacatcgtgaaagacgtgcagcgggccatgctggagctggaggggctgctg
gagcacaaggagaaggagctgacccagctcgaggctgagaggcagtgctggaccgaggcg
gagagcggacacactcagagcctcagtgtcctggagcacaaaatcagcgatcaggcccat
gaggtgctgactgtggctgcttccagagactccctgtacaaccagttggagacactccac
attgagatcgagcgcggccagcagaagatccgccaggagctggagggggccgagcaggtc
cacctgcaagaactggaggagaggatgaggcagcagcatcaggcccagctagacaccctg
acccgggagaaccaggaggccatggagtgcctggcaacggtgcacagggtcaagctgagt
gaggtcgcagaccgccacgccgcctctctgacagagagggacggccagctgagggacctg
gaggcccgggcaaccgagctggctgacctacgctgcaagctggaggtggagctggccctg
aaggagtcagagatggaggttgtgaggcttctctacgaggaggccaagcaggggcagcag
gaagccaacgtgaggaaggctactgtagaggcagagacccagtccctcaacgaacagcta
gttcaggtcaacgggcagctgcatgctaagaacgaagagtacgagaagggcctggccgag
ctccggacgctgatgcgcatggagaaagaccagtgcatctcggagctggtgggcaggcat
gaggaagagcggaaccagcgccgcagcgagctgaccgccttacagcagcaggcccaggac
gcaggaaggagccatgcagaacagctgcagaacctccaactagacctcgacctgcagacg
gcagtactgcgcaacgacaaggaagtgcagcagagtagttttgaggagcaggagcaacac
ttgaggactgttatctgcgatttgcagacagaaaatgatctgctcaccaaaagattagag
caggacacccaagcagcccaggaacgtttggagaaagaggagtccttgaaggctgcagta
ccagatgccttcaaagactttgagcaacaaaaggaggagattgagaaaagacttctagac
aaaattagacaacttgaaaatgagcttcgggaaagacaatcctcagaaagagaggcgggg
ttgtcgaaggtgcagacagagggtcggggatccgaagcaggagctcctctctccctggac
tctgccttgcaggagcgtctgcagcaggagacggcctccctgcacacccagctggagctc
ctggagaggaggaaggatgaggagatgcagaacctcaagacctccctcatcgcagaacaa
cagactaacttcaacactgttctgatgagagagaagctgaaaaaggaacagatcatcagt
gagctcacagaggagctgcggaaggttacccagcagcaggagaaggacaaaggtctgata
gagatgctgtctgaggaccgggccatcgtcatgcaggagaagaagcagttggaggaggat
ctgaatcggctgcgcagcacagccctggtgtcctctgcctactacagccctagcccctta
gctctagagcccactggagccggggctagacttggatctggagcatgtcctggacctggg
actgaggttggggttggagcctgctcctcggagctcttccctgacccagacagactggcc
tctgtggctgccaccagagaggacgacagagtggactctgctgtggaggccagcatggtg
actgtgcacgataacatcctgatgatgtcggaggagaaacagcggatactgttacttgag
aggactttacacatgaaggaagaagaaaacaagcgcctcagtcaaagactgatgtctcaa
agcatgtcctcggtgtcgtcacggcattctgagaaaattgccatccgagatttccaggtt
ggcgacttggttctgatcatcctcgatgaaaggcatgacaactatgtgctattcaccgtg
ggtcccaccctgtacttcctccattctgagtccctcacggccctggacctcaaaccagat
cctatgtttacttcagcatcaggagcctcaagacggccgtgggttctcggaaaagttatg
gagaaagaatattgccaggcgaaaaaggctcaaaaccggttcaaagttcctttgggcacc
aagttctacagggtgaaagctgttccgtggaacaagaaagtatag
DBGET
integrated database retrieval system
