Oncorhynchus keta (chum salmon): 118395192
Help
Entry
118395192 CDS
T09424
Name
(RefSeq) retinoic acid receptor RXR-gamma-A-like isoform X1
KO
K08526
retinoid X receptor gamma
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03320
PPAR signaling pathway
oke04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
118395192
03320 PPAR signaling pathway
118395192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118395192
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oke03310
]
118395192
Transcription factors [BR:
oke03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
118395192
Nuclear receptors [BR:
oke03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
118395192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
Motif
Other DBs
NCBI-GeneID:
118395192
NCBI-ProteinID:
XP_052319482
LinkDB
All DBs
Position
15:complement(17304851..17331460)
Genome browser
AA seq
508 aa
AA seq
DB search
MRIIAGVGDSGGKEESDLIDISQSELDMYVNYQPLMLLPDFDSSSVQVSHLSSTPSQSLS
TMVGPPHHHPYHHHHHHHHHPSVISASVNPGQPLPSPMSTLGSPFNGQGSSPYSVITSSS
LGSPSVSIPPTPTMGFSTLSSPQMNSLNNVSSSEDIKPPPGLAGLGHMNSYGCMSPGSMS
KHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLSYTCRDSKQCLIDKRQRNRCQYCR
YQKCLAMGMKREAVQEERQRGREKSDNEVESTSSFNEDMPVEKILDAELAIEPKTEACME
ASAGNSKNDPVTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFS
HRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIV
LFNPDAKGLSNPTEVEALREKVYASLESYTKHRYPEQPGRFAKLLLRLPALRSIGLKCLE
HLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgagaatcatagcaggtgtcggagattccggaggaaaagaggaaagcgacttaatagac
attagccaatcagagttagatatgtacgtaaactaccagcccctgatgctccttcctgac
tttgacagttcttctgtgcaggtctcgcacctgagctccaccccatctcagtccctcagc
accatggtggggccccctcaccaccacccctatcaccaccaccatcatcatcatcaccac
ccctccgtcatcagtgcctctgtcaaccccgggcagcccctcccgtctcccatgagcacc
ctgggctcgccattcaacgggcagggcagctcgccgtactcagtcatcacctcgtcatct
ctgggctccccaagtgtctccattccccctactcccaccatgggtttcagcacactctcc
agcccacagatgaactctctgaacaatgtgagcagcagtgaggacatcaagcctcctcca
ggcctagctggactgggtcacatgaatagctacggctgcatgagcccagggtccatgtcc
aagcacatctgtgccatctgtggggaccgatcctcagggaaacactacggcgtgtacagc
tgtgaaggctgcaagggcttcttcaagagaaccatcaggaaggaccttagctacacgtgt
cgagacagcaagcagtgcctgatcgacaagcgccagcgcaaccgctgccagtactgccgc
tatcagaagtgtctggctatgggcatgaagagagaagcggtgcaggaggagcgtcagcgg
ggccgggagaagagtgataatgaggtggagtctaccagtagttttaatgaggatatgcct
gttgagaagatactggacgcggagctggctatcgaacccaagactgaagcctgtatggag
gcgagcgcaggcaactctaagaacgacccggtcaccaacatctgccaggcagcagacaag
cagctgttcaccctggtggagtgggccaagaggatcccccacttctctgagctggccctg
gacgaccaggtcatcttattacgagcaggttggaatgagctgctcattgcctcgttctcc
caccgctctgtgacagtgaaggatggtatcctattggccacggggctccacgtacaccgc
agcagcgcccacagtgccggggtgggctccatctttgacagggtgctgacggagctggtg
tctaagatgaaagacatgcagatggacaagactgagctgggctgcctccgagccattgtt
ctcttcaacccagatgccaagggcctgtctaatcctacagaggtggaagccctgagagag
aaggtgtacgcctcactggagtcctacactaaacacagatatccggagcagcctggcaga
tttgccaagctgttgctgcgtctgcctgcactacgctccatcggcctcaagtgtctggag
cacctcttcttcttcaagctgataggagatacgcccatagatactttcctcatggaaatg
ctcgaagcgccgcaccagatcacatga
DBGET
integrated database retrieval system
