Oncorhynchus keta (chum salmon): 118395753
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Entry
118395753 CDS
T09424
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
118395753 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oke04121
]
118395753 (rag1)
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118395753 (rag1)
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118395753 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1
RAG1_C
RAG1_pre-RNase_H
RAG1_ZnC2
RAG1_DNA-bd
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_10
TRAF3_RING
zf-RING_UBOX
zf-C3HC4_4
zf-RAG1
zf-RING_2
zf-RING_6
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
118395753
NCBI-ProteinID:
XP_035645536
LinkDB
All DBs
Position
17:complement(35628158..35635260)
Genome browser
AA seq
1078 aa
AA seq
DB search
MEEGTLETYAPRCSMPAELHHPYSKFSDWKFKLFRVRSMERAPLPGEMQLERGALSGVVA
SAPLGETVGDVVDLPGSVMKLCLGGKSKENVEGPGKRVDLKLQEMDTHMNHLRCLCRLCG
GALRKAKGPEHEVQGLLDEDSRSALRRMGCKATSWPEVILKVFKVDVAGDMEVVHPPFFC
QRCWTLAMRGGGFCSFSRTHVPGWRPHTTLCLLCQPKKPSLQRRGRKRRKPTRGAQRLAK
RTKWDIQDNAAIVGEKRAWRTVIDPHQGPGLRPWVRSSVQRAQWVKSITLCQKEHLSARL
LSEDLPVDFLSSVTCQVCDHLLSEPVQSPCRHLFCRSCIAKYIYSLGPHCPTCTLPCGPA
DLTAPAKGFLGVLHSLLLLCPRERCGEQVRLDSFRAHCLGHHLEEVDGDHKSAENSLDNF
LPVNKGGRPRQHLLSLTRRAQKHRLRDLKTQVKVFAEKEEGGDTKSVCLTLFLLALRAGN
EHRQADELEAMMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTL
RAAEKELLPGYHPFEWQPALKSVSTSCHVGIIDGLSGWIASVDDSPADTVTRRFRYDVAL
VSALKDLEEDIMDGLRERGLEDSACTSGFSVMIKESCDGMGDVSEKHGGGPAVPEKAVRF
SFTIMSVSIQAEGEDEAITIFREPKPNSEMSCKPLCLMFVDESDHETLTGVLGPVVAERN
AMKHSRLILSVGGLSRSFRFHFRGTGYDEKMVREMEGLEASGSTYICTLCDSTRAEASQN
MTLHSVTRSHDENLERYELWRTNPHSESAEELRNRVKGVSAKPFMETQPTLDALHCDIGN
ATEFYKIFQDEIGEVYHKANPSREQRRSWRAALDKQLRKKMKLKPVMRMNGNYARKLMTR
EAVEAVCELVCSEERQEALRELMGLYIQMKPVWRSTCPAKECPDQLCRYSFNSQRFAELL
STVFKYRYDGKITNYLHKTLAHVPEIVERDGSIGAWASEGNESGNKLFRRFRKMNARQSK
TFELEDVLKHHWLYTSKYLQKFMEAHKDSAKALQATIDTVGSQETQEDADMSLDVPDF
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggaggagggtaccctggagacatatgccccccggtgctccatgccggccgagctccat
cacccctactccaagttctcagactggaagttcaagctgttccgggtcaggtccatggag
agggccccgctgcccggggagatgcagctagagagaggggccttgtctggggttgtggcc
tctgcacccctgggggaaactgtgggggatgtggtggacctcccagggagtgtgatgaag
ctttgcctggggggtaagagcaaggagaacgtagagggcccgggaaagagagtggacctg
aaactccaggagatggacacacacatgaaccacctcaggtgtctgtgccgtctctgtggc
ggggccctgaggaaagccaaaggtccagagcatgaagtccaggggcttttggacgaggat
agcaggagtgccctgcgtaggatgggctgcaaggccaccagctggccagaggtcatcctc
aaggtcttcaaagtggacgtggcgggggacatggaggtcgtccatccgccattcttctgc
cagcgctgctggacattggccatgcgaggagggggcttctgcagcttctccaggacacat
gtccctgggtggagaccccacaccaccctctgcctcctctgccaacccaagaaaccctca
ctacagaggagagggaggaagaggaggaagcccactcgtggagcccaacgcctggccaag
aggaccaagtgggacatccaggataacgctgctattgttggtgagaagagagcctggaga
acagtgatagatcctcaccagggacctggacttagaccctgggtgagatccagcgtccag
agagctcagtgggtgaagagcatcaccctctgccagaaagagcaccttagtgccagactg
ctgtccgaggacctccctgtggacttcctgagctcagtcacctgtcaggtgtgtgaccac
ctgttgtctgagcccgtccagtccccctgcagacacctcttctgccgcagctgcatcgct
aaatatatttactctctgggcccccactgcccgacttgcaccctgccctgtggccctgcc
gaccttactgccccagctaagggcttcctgggggtcctgcactccctgctgctgctttgc
cccagagagcgctgtggggagcaggttcggctggactccttcagagcccactgcttgggt
caccatctggaggaagtggatggggaccacaagtcagcggaaaatagcctggacaacttc
ctgcctgtcaacaaagggggaaggccccgacagcatctcttgtcactgacgaggcgtgcc
cagaagcaccggctgagggacctgaagacccaggtgaaggtgtttgcagagaaggaagaa
ggtggagacaccaagtcggtgtgcctgaccctgttcctgctagctttgagggctggaaac
gaacaccggcaggcagacgaactggaggccatgatgcaaggtagaggctttggcctgcat
cctgctgtgtgtctggccatccgggtcaacacgttcctgagctgcagccagtaccacaag
atgtaccgcaccgtcaaggccaccagtgggcgccagatcttccagcccctgcacacctta
cgcgctgcagagaaggagctcctcccaggctaccacccctttgagtggcagccggccctc
aagagtgtgtccacatcctgccatgtggggattattgacgggctatcagggtggatcgct
tcggtggacgactccccagcagatacagtcacgcgacggtttcgctacgacgtggccctg
gtgtcagccctgaaggacctggaggaggacatcatggatgggctgagagaacgaggcctg
gaggacagtgcttgcacctcgggcttcagcgttatgatcaaggagtcctgcgatggtatg
ggggacgtcagtgagaagcatggcggagggccggccgtcccggaaaaggctgtgcgtttc
tccttcaccatcatgtccgtctctattcaagctgagggagaagatgaggcgatcaccatt
ttccgggagcccaagcccaactcagagatgtcctgcaagccgctatgcctgatgtttgtg
gacgagtcggaccacgagactctcacaggcgtcctggggcctgtggtggccgaaaggaac
gctatgaagcacagccgtctcatcctgtctgtgggcggcctttctcgctccttccgcttc
cacttccggggcacgggctatgatgagaagatggtgcgagagatggagggtttggaggcc
tctggctccacttacatctgcacgctgtgtgactccactcgggcagaggcctcccaaaac
atgactctccactctgtcacccgcagccatgacgagaacctggagcgctatgaactttgg
aggaccaaccctcattctgagtcagctgaagagctgcgaaaccgagtcaaaggtgtctct
gccaagcccttcatggagacccagcccacactggacgccctgcactgtgatatcggcaat
gccactgagttctacaagatcttccaggatgagataggggaggtctatcacaaggcaaac
cccagccgggagcagcgtcggagctggcgggccgccctggacaagcagctgaggaagaag
atgaagctgaagcctgtgatgaggatgaatgggaactatgcacggaagctgatgacccgg
gaggcagtggaggcagtgtgtgagctggtgtgctcagaggagcgtcaggaagccctgagg
gagctgatggggctctacatccagatgaagcctgtgtggcgctccacctgcccggccaag
gagtgcccagaccagctctgccggtatagcttcaactcccaacgcttcgcagagctgctc
tccaccgtcttcaagtacaggtatgacggaaagatcaccaactacctgcacaagaccttg
gcccatgtgccagagattgtggagagggatggctccatcggggcctgggccagcgagggg
aatgagtctgggaacaagctgttcagacggttcaggaagatgaatgcccgccagtccaag
acctttgagctggaggacgtgctgaagcaccactggctctacacatccaagtacctgcag
aagttcatggaagctcacaaggactctgccaaagctctgcaggccaccattgacactgtg
gggagtcaggagacacaggaggatgctgacatgtcactggatgtcccagacttttga
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