Oncorhynchus keta (chum salmon): 118395991
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Entry
118395991 CDS
T09424
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118395991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118395991
03019 Messenger RNA biogenesis [BR:
oke03019
]
118395991
04121 Ubiquitin system [BR:
oke04121
]
118395991
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118395991
Transcription factors [BR:
oke03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
118395991
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118395991
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118395991
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118395991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-UDP
DZR_2
RDD1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
118395991
NCBI-ProteinID:
XP_035646012
LinkDB
All DBs
Position
17:51128734..51147582
Genome browser
AA seq
868 aa
AA seq
DB search
MSHSPEMKDDSMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQTL
LQDLYKMNPSFLQTSTCAGEKSKSRSSNSTHRPNNGKDGWPILSGYGGKLANGLSEDRKS
PPLLDCCLDPEGMTSDGLGLGLGLDTELGMGSGQGAALSPFSSNCDSNSPSDKPPESISM
VNGETLQQMPNSESPSSPPGLTRPPSSLVVPISVVDLTARSPFEGAAAESQSLFSDNSNF
RQPNPIPSGLPPFPNTPRGGSDWPMTPEPQSLFASDTIPVSSSTDWQAAFGFGSSSKTQQ
QDDDLGFDPFDITRKALADLIEKELSVQDQPSPLGSPGPFSLHHPGSHHPGSHHPGSHHG
LHLPPSNPNHFSSSLGPPTRLSQLHHRQIYSSFSFPGSQSQSSHHGGSQAAQAATASRHP
WMDTSPSARSNNHLSHLNHSANAGGGHGNFLDLNMPPQRHSTGLGGIPISESSCSIDGLN
VKEWQAGLRALLPNININFGGLPNSSSSSSSSSSSSVNHIGRPNHLGGPGGLNGPGGLSH
SLSWDGTASWMDPAIITGSIPASTGNSSDLFQEDQNPPHWLKSLQALTEMDGPALPSSSL
PQQPQNQQHLSLHSHHHGLLDQAASHPHLPLHHRAGSGWAPYLPSLAQPTQANPSQFHSP
PPGFQTAFRPPGQSATELLNSTTAGDRH
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccccgagatgaaggatgactctatggagtgccctctgtgcatggagccg
ctggagattgacgacgtcaacttcttcccctgcacctgtggctaccagatctgccgcttc
tgctggcaccgcatccgcacagacgagaacggcctctgccccgcctgcagaaagccgtac
ccggaggaccctgcggtgtacaagcccctgtcacaggaggagatccagaggataaagaac
gagaagaagcagaaacagaacgagaagaagcagaaggtgacagagaacaggaaacacctg
gccagcgtccgggtggtgcagagaaacctggtgtttgtggtcgggctctctcaaaggctt
gcagatccagaggttctaaaaaggccagagtattttgggaagtttgggaaaatacacaag
gtggtcatcaacaacagcacatcatatgcaggttcacagggtcccagtgccagtgcctat
gtcacctatatccgctctgaagacgccctcagagcaatacaatgtgtaaacaatgtagtg
gtggacggcagaacgctcaaggcttctttaggtacaacaaaatactgcagttacttcctc
aaaagcatgcagtgtcccaaaccagactgtatgtatctacatgagctgggggacgaggcg
gctagctttactaaagaggagatgcaggctgggaaacaccaagaatacgagcaaacacta
ctccaggacctctacaaaatgaacccaagctttctacaaacgtcaacgtgtgcaggggaa
aagtccaaaagcagatcttcaaattctacacacagacccaacaatggcaaagatgggtgg
ccgattctatcggggtacggtgggaaactggccaatggcctgtcagaggacaggaagtct
cctccactgctagactgctgcctggacccagagggcatgacctccgatgggttaggactt
ggcctggggctggacaccgagctggggatggggtctggtcagggtgctgccctgtccccc
ttctcctctaactgtgacagcaacagtcccagcgacaaacctccggaatcaataagtatg
gtgaatggagagacattacaacagatgcctaacagtgagtccccctcctctcctccgggg
ctgaccagacctccgagcagtctggtggttcctatcagtgtagtggacctcaccgcccgc
tctcccttcgaaggggctgctgcagagtcccagtcgctcttctcagacaacagtaacttc
agacaacccaaccctatcccgtctggcctgccccccttccctaacacacctagaggggga
tccgactggcccatgacccctgaaccacagagcctcttcgcatcagacacaataccggtc
tcgtcctccacagactggcaggcggccttcggcttcggctcctcatccaagacacaacag
caggacgacgacctaggcttcgaccccttcgacatcacgaggaaggccctggctgacctc
atagagaaggagctgtcagtccaggaccagcccagtccgctggggtcccccggccccttc
agcctccaccaccccgggtcccaccaccccgggtcccaccaccccgggtcccaccacggc
cttcacctgcccccctccaaccccaaccatttctccagtagccttggacctccaacccga
ctctctcagctccaccacaggcaaatctatagttcctttagtttccctggttcccagagt
cagagtagtcatcatggtggaagtcaggctgcccaggccgccacagcctctcggcatccc
tggatggacacgtctccctcggcacgcagcaataatcacctctcacacttgaaccactcg
gccaacgctggagggggacatggaaacttcctggacttgaacatgcctcctcagcgccac
agtacagggctgggagggatccccatatcagaaagcagctgttctatagatggcctcaat
gtgaaagaatggcaggctggcctgagagctctcctccccaacattaacatcaactttggc
ggtctccccaactcctcctcttcctcctcctcctcctcgtcctccagtgtgaatcacatc
gggcgtcccaaccacctggggggtcctggggggctaaatgggccaggggggctatcacac
agcctcagctgggacggtacggccagctggatggacccagccatcatcacaggtagcatc
ccagcctcgacagggaacagttcagaccttttccaagaggaccagaatcctcctcactgg
ctcaagtccctccaggccctgacagagatggacggccctgccctgcctagctcctctctc
ccccagcagccccagaaccaacagcacctgtccctccacagccaccaccacggcctccta
gaccaggctgcctcacacccacacctccccctccaccacagagctggctccggctgggcc
ccttaccttcccagcctggcccaacccacacaggccaaccccagccagtttcacagccct
cccccaggcttccagacagccttcagacccccaggccagagcgctacagagctgctaaac
agtaccaccgccggagaccgacactaa
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