Oncorhynchus keta (chum salmon): 118396066
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Entry
118396066 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04382
Cornified envelope formation
oke04510
Focal adhesion
oke04512
ECM-receptor interaction
oke04518
Integrin signaling
oke04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118396066
04518 Integrin signaling
118396066
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118396066
09142 Cell motility
04820 Cytoskeleton in muscle cells
118396066
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118396066
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oke04147
]
118396066
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118396066
Exosome [BR:
oke04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118396066
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118396066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118396066
NCBI-ProteinID:
XP_052319318
LinkDB
All DBs
Position
15:10918648..10984516
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AA seq
1654 aa
AA seq
DB search
MRTALLCFALGVLLRGIEAKDCVCTGKSMCHCEGVKGNKGERGFAGETGPPGSVGHPGSE
GHLGPVGPKGDVGPHGPPGTDGDRGPEGKEGFSATPGLPGIPGLQGPMGQPGSPGCNGTE
GERGATGLAGPSDGDDGLRGLPGAAGPKGESQMLIGFGQSGRPGPRGRDGDQGVHGVTGP
TGQQGNVGPRGVVGLLGLPGIPGFKGQEGRSSSIPGSGGPKGHQGPPGFPGPKGIKLYAH
APSDLKGEIGALGEKGCKGSPGYAGQVNLKEKGDQGGIGTEGRPGKDGRQGPAGYEGRKG
NPGLAGPDGIPGPRGQKGVQGQDGDPGEVTMIGCDVIGPKGQPGFTGPPGLPGVTGPPGA
TGFEGPPGSPGPNNGGDPYNRGAKGHSGPKGDEGDPGPIIQGEPGREGSQGTTGDLGPPG
PPGESYNLKGVIGPPGAKGAKGEQGYGGQYGSKGEKGEVCSLCTGKGSGEPGPPGSPGQP
GVPGFSAGPGPKGEPGLKGPSGSPGQQGLHGPSGVPGPPGPKGNSGSCNHQGIKGEKGTP
GPAGRSGLDGLYGAPGFRGRKGQQGPKGDPYDGPLGLKGDTGDPGPPGPQGYPGPDGSPG
PVGIGPLGPSGPKGNSGVPGLPGTPGYQGQKGEPCSSVADQGVPGLPGKTGLPGTRGPPG
PRGGAGNPGEKGDSGVFSTLGRRGPTGQKGDKGQPGRPSTSGSGYPGRPGVMGFPGAQGP
KGDAGFETLGPAGPKGFPGGVGAQGPPGDPGVLGRPGSPGPPGINGSSGPKGSKGVDGSQ
GPPGYAGTCCTEASTGPPGLSGRPGLPGINGEMGSCGDPGTPGFGSSGPAGDPGPPGASG
PVVQGLTGQMGGRGRDGLPGASGPRGDPGLEGRSGPGPDGPPGPEGPPGPKGSVGPDGEK
GHSGVPGSVGDDGRPGPCGPSSDTVINGPPGDPGIHGLPGFHGAKGHPGYPGPKGIDGRD
GDPGNGPRGCPGDPGADGLCSGGPGPSGLRGNMGLMGLPGPHGTQGGLGSNGDAGLDGRP
GPRGPKGTKGESSYAKPGLPGSPGQKGEPALNNKRDSKGMKGSPGYAGPPGSQGPSGAKG
DPGHHGAQGPAGQPGTDGPPGPPGLPASHGAPGQPGLPGPPGPYGPKGNQGHDGIPGPAG
QKGETLIVRSTPGPRGKNGLPGSKGDVGFPGPTPPGPPGCPGDQGHRGNEGPQGSRGRPG
FGGVCVNGLKGDAGSHGNPGSPGQRGPQGQPGSGGYESKGDRGDLGAPGGRGLDGPTGDL
GPPGLPGPGSSPGPPGPIGSPGHSGTPGVPGEMGEPSFNPGPKGPNGSRGPPGPPGCPGL
DVSVRPEKGDPGPPGYTGNQGPPGHSGLPGQPGLTGPPGPEGQQGHSPPGLPGFPGCKGD
KGSPGLTGPLGYRGFPGQKGPLGPRGSSTAGLADSFLLARHSQTIRVPHCPQGTALIYSG
YSLLFINGNKRAHGQDLGSIGSCLPRFSTMPFLFCDTDNTCRYAARNDYSYWLSTEKPMP
RSMDLIRGDEISSYISRCSVCEGSSNXHGQTAQLPDCPGDWESLWTGYSFVMQTGAGAEG
SGQPLGSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSFWLALLDPNYMFSKPVPQTVKGP
LLEKVISRCRVCRKPQSNDKSSQAQAITQNIWNI
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgaggactgcgttgctttgttttgctttgggggtgttgctgcgaggaattgaggcgaag
gattgtgtgtgtactgggaagtccatgtgtcactgtgaaggagtcaaaggcaacaaggga
gaaaggggttttgcaggagagacgggtccacctgggtcggttgggcatccaggctcagag
ggtcaccttggacctgtggggccaaagggagatgtgggccctcatggacctccaggaaca
gatggcgatcggggacctgaaggcaaagaaggattttctgcgacaccaggtctaccgggc
atcccaggccttcaaggaccaatgggccaaccaggttccccaggatgcaatgggacagag
ggtgagagaggtgctactggtctagctggtccctctgatggggatgatggattaagaggt
ttacctggagcagctggaccaaagggtgaatcccaaatgttaattgggtttggacagtca
gggagacctggaccccgaggaagggacggtgaccagggtgtccacggggtaacaggaccg
acaggacaacaagggaacgttgggccccgtggtgtcgttggattgctaggtctacccggg
atcccagggtttaagggtcaagagggacgcagctccagtatccctggctctggtggtcca
aagggacaccaagggccccctggattcccgggacccaaagggatcaaactatatgcccac
gctccctccgatttgaagggggagataggggctctgggtgagaagggctgtaagggttca
cctggttatgctggccaggtcaacttgaaggaaaaaggggaccaggggggcattggcact
gagggaagaccagggaaagatgggcgtcaagggcccgctggatatgaggggagaaagggg
aatcccggtttagcaggacctgatggaatacctggaccgcggggacagaagggtgtccag
ggtcaagacggagaccctggggaggtgaccatgattggctgtgacgtaattggccccaaa
ggacaaccaggatttactggccccccggggctccccggggttactggtcccccaggtgcc
actggattcgaggggcctcctggttctccaggtcctaacaacggaggagatccctacaat
cggggagcgaagggccacagtgggcctaaaggggatgaaggagacccaggacccatcatt
cagggagagccaggcagggaaggctcacaaggaacaactggagaccttggacccccggga
ccacctggagaatcatataatctgaagggtgttatcggacctccgggggcaaagggagcc
aagggagaacaagggtacggtggccaatatggatcgaaaggtgagaaaggggaggtctgt
agtttgtgtacgggaaaaggatctggagagccgggacccccaggttcccctggtcagcct
ggagtcccaggctttagtgcaggaccaggtcccaaaggagagccaggactcaaaggaccc
tcgggatcacctggacaacagggtctccatggcccttcaggtgttccaggacctccaggg
ccaaaaggaaattcaggttcctgcaatcaccaggggataaagggagagaaaggaacccca
ggaccagctggcagatcagggctggacggcctatacggggcccctggctttcgtggacgc
aagggccaacaaggccctaagggtgatccatacgatgggccactgggtctgaagggagat
actggtgacccaggccctcccgggccacagggatacccaggaccagacggttcaccaggt
ccagtaggcataggaccgcttggcccctcaggacctaaaggcaatagtggggtaccaggt
ctacctggtacacctggttaccaaggtcagaagggcgagccctgcagcagtgtggctgac
cagggagtcccaggcctaccgggaaagacggggctgccgggcacacggggccccccaggt
cctcgtggtggtgctggtaacccgggggagaaaggggacagtggtgtattctccaccctg
ggaagacgaggacccactggacagaaaggtgacaaaggacagccgggacgcccaagtacc
tctggaagtggctatcctggacgacccggcgtaatgggattccctggggctcaagggcca
aagggtgatgctgggtttgagaccctaggtccagccggccctaaaggtttcccaggtggt
gttggggctcagggccctcctggagatccaggagtactgggccgaccagggagtccggga
ccacccggcatcaatgggtcttcaggccccaaaggaagtaaaggtgtagatggttcccaa
ggacctcctggttacgcaggtacttgctgtactgaagcctcaaccggaccaccagggctg
tcaggcagacctggactcccaggtattaatggagagatgggttcgtgcggggaccctggc
accccagggtttggaagctcaggtccggctggtgaccctgggccccctggggcctccgga
cccgtagtgcaaggcctgactggacagatgggaggcagagggagagacgggttaccaggt
gcatcaggtcctagaggtgaccctggactggaaggaagatctggaccgggccctgacggc
ccacctggacctgaaggaccacccggtcccaaagggtcggttggccctgatggggagaaa
ggtcacagtggtgtaccaggctctgtgggggacgacgggcgcccaggcccttgtggacca
tcatccgatacagtcataaatgggcccccaggggaccctgggatacatggtctgcctggt
ttccatggtgctaaaggacaccctggatatcctggacccaaaggcattgatgggagggac
ggtgacccaggaaatgggccgagaggctgtccaggtgatcctggggctgatggactgtgc
tcaggaggaccaggcccatctggactcagaggaaatatggggctcatgggtctaccaggt
ccccatggaacacagggagggttgggttccaatggagacgcaggactagacggtaggccc
ggtccacgcgggccaaaaggaactaaaggagagtccagttatgcaaaaccaggcctccca
ggatcacctggacagaagggcgaaccagccttgaataacaaacgtgactccaaaggaatg
aaaggctctcctggttacgcaggtcctccaggctcccaaggaccttctggagccaaagga
gacccaggacaccatggagctcaaggtcctgctggccaaccaggtactgatggtccccca
ggccccccaggactccctgcatcacatggagctccaggacaaccagggttacctggccct
cctggtccctatggtcctaaaggtaaccagggtcacgatggcattcctggacctgctggt
cagaagggagagacactgattgtgagatcaactcctggcccacgtggaaagaatggactg
ccaggttcaaagggagatgtgggattccctggccccacccctccgggccccccaggatgt
ccaggagatcagggccaccgaggcaacgaaggaccccagggttctcgcgggaggccaggg
ttcggtggtgtttgtgtcaacgggctgaaaggagatgctggttcccatggcaaccctgga
agccccggacagcggggtccacagggacagccagggtctggaggctatgaatctaaaggg
gacaggggagacctgggcgctccagggggcagaggcttggacgggcctacgggggacctc
ggacctccagggttaccgggaccaggatccagccctggacctccaggaccaatcggttcc
ccaggtcactctggaaccccaggagtccccggtgagatgggtgagcctagttttaacccc
ggcccgaaaggaccaaatggatccagaggcccgccaggaccaccaggttgtccggggctt
gatgtgtcagtgagacccgaaaagggggatccgggcccacccggttacaccggtaaccag
ggacctccaggtcacagtgggctgccaggacaaccaggattaacaggccccccaggccct
gagggtcaacagggacacagccctccaggcctgcctggcttccccggatgcaagggagac
aaaggatcgccaggactgacaggaccgttgggttaccgggggtttccgggtcagaagggt
cctcttggcccacggggaagcagcacggcaggcctggctgacagtttcctgctggccaga
cacagccagaccatcagagtgcctcactgtccccaaggcaccgccctcatctactctgga
tactctctgctcttcatcaatggcaacaaaagggctcacggacaagacctgggctccatt
ggcagctgcctgcctcgtttctccaccatgcccttcctgttctgtgacacggacaacacc
tgtcgctacgccgcccgcaatgactactcctattggctgtccacggagaagcccatgcca
cgcagcatggacctgatcagaggagacgagataagcagctacatcagcaggtgttcagtg
tgtgagggcagctccaatngccatggccagaccgcccagctcccagactgtcctggtgac
tgggaatccctgtggactggatactcctttgtcatgcaaacgggtgcgggtgctgagggg
tcgggccagcctctgggctccccaggctcgtgtctagaacacttccgccaggtccccttc
atcgagtgtcacggccggggaacctgtaactacttccctgactcctacagcttctggctg
gccttgctcgaccccaactacatgttcagtaagcctgtgccccagacggtgaagggacct
cttctagagaaggtcatcagtcgctgccgcgtatgcaggaaaccacaaagcaatgacaag
tccagccaggctcaagcgatcactcaaaatatttggaacatctaa
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integrated database retrieval system
