Oncorhynchus keta (chum salmon): 118396676
Help
Entry
118396676 CDS
T09424
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118396676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118396676
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118396676
mRNA degradation factors
5'-3' decay
Decapping complex
118396676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
Pdc1_Ge1
WDR55
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
118396676
NCBI-ProteinID:
XP_035646902
LinkDB
All DBs
Position
17:24455021..24495214
Genome browser
AA seq
1421 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSVDASPSENQSRTSFNGELNGLLGADLIGAGDR
STMAESSPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKVK
IQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAVT
DLAFAHLDSTLLGCVDEAGNLVIWQLTCHSSKILDQVIVHVRRPEDTPLNSNRRLIWCPF
ILEDNEENPEDASQTLALLHEDRAEVWDLEILRSNNGTWPVDATDLKDGVITIKGHTDRI
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCLL
FCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPCLKAS
LDLSAECLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSHSRLC
HTEVLPPDEESESMTADGNQGTMESKAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLFL
PHSNSNNGFGFSDHLTDMSVEGLSSDKESGCGSENDLCKIPALADFLSSSGTAAMPKLMT
PDAFMTPSASVPASPGSSASSLTIVTAMSSNSDSGASDGNVCRGGEELTQSPKMSVESNS
ILIAGLGDNMPMYHLPQETTPHTLMFPLTYPLRPLQGLPSPNPPLSLDPQVIEPMLIQQA
SPTRARSPDVISSASTAMSQDIPEIASETLQRGLGGMSGAESRETLPALHTDSMASAASA
LHLLSPRNRNSSGHLPLELGAVVGAVEAEQRLSNTPSLLENALSQENAAAAASCSDNNVS
HPWPAAPDITRETRNSLRDNGLGDCSREETKDRHMSSPYHRRTYHLTQNDSQDASAEQSD
HDDEVASLESSSGNCGARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPEQ
HHQQMNPEVLEELLILLRNQQREIAELHQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQ
QEHEQRRMERILAEGHTRNQQLQEHLSQQLGQTLSNTLCNRLDKTLREEMKKTVPHTITK
SLEPVTAQMSNTIAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDA
FQGIVLPVFERGCQSMFQQINESFKQGTHEYIQQLETHVKNKKQHEQEARDPMIGQLQQM
IDTFQNSTDQLATTITASVRSEVQHQLHMTVGNLQDSILTQVQRIVKGEVSMAMKEQQAA
VNSSIMQAMRSAAGTPVPTAHLDYQAQQASILQLLQQGQLNQAFQQALSASDLNLVLYVC
ETIDSQQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDH
MSAVLSQVRQKLFQFLQSDPHSPLSKRARRLVMMLQGLVNH
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aagctggaccgacccgggaacagtgttgatgcttctccaagtgagaaccaaagcagaaca
tctttcaatggtgaattgaatggacttctgggagcagaccttataggagcaggcgacagg
tcaaccatggctgaatccagccctaattcagagaacatgaacacccaagagtgtcagatt
atctgcctctctggggatgatggctccacttgcattcccatcacatctaacaatgttgaa
attgtggccagtcgagactcaagcattgacagcaaggcacgtggcagcaacaaggtaaaa
atccagcctgttgccaagtacgactgggagcacaagtattactacggcaacctcattgcg
gtctctaacgcatacctggcatatgccatccgaggagcaaacaaccaggccatgatccgt
gtgttgagcttgggctcggcagagcgcaccctgctgaagggcttcactggtgcagtcaca
gacctggccttcgcacacctggactccaccctgctgggatgtgttgacgaggccggtaac
ctggtcatctggcagctcacctgccatagcagcaagatcctcgatcaagtcattgtccac
gtccggaggcctgaggacacacctctgaactccaataggaggttgatctggtgtcccttc
atcctagaggacaatgaagagaaccctgaggatgccagccagaccctggccctactgcat
gaagacagagctgaagtgtgggatctggagatcctccgcagcaacaatggtacctggcca
gtagatgccactgacctgaaggacggcgttataaccataaaaggacatacagatcgcatc
agtgaaggtgccctgtctccggatggcacagtcttggccacagccagtcatgatggttat
gtaaagttctggcaaatctacattgaaggacaggaccagccaagtcctctccccggcttc
ttccacagatgtctacacgagtggcagccccacaacgggaaccccctttcctgcctgctg
ttctgtgacaaccacaagaaacaggacccagatgttccattctggcgctttctgattact
ggagctgatcagaaccaggagttgaagatgtggtgcacagtgtcatggacctgcctgcag
accatcaggttctctccagacccgttcaattcctcagtcctgccctgtctgaaggccagt
ctggacctgtctgcagaatgcctcatcctcagtgacgtacagagaaaggtgttgtatgtg
atggagttgttgcaggaccaggaaaaaggcagagccagcttcacagccgtgtcagagttt
ctgctcacacaccctgtgcttagcttcggtgttcaggatgtcagccacagccgcctgtgc
cacacggaggtcctcccgccagacgaggagagcgagagtatgactgcagatggcaaccag
ggcacaatggaatccaaagctgggatccaaatcaagctatattgtgttcacacaaagtcc
cttcaagatgtgcagatctggttccagccaaaccttggctctggctcatccttgtttctg
cctcactcgaactcaaataatggctttggtttttcagatcacttgacagacatgagtgtg
gaaggtttgagctctgataaggagtctggatgcggctccgaaaatgatctctgcaagatt
cccgctcttgctgacttcctgtcctcctccggcactgctgctatgcccaagctcatgacc
cctgacgccttcatgacccccagtgcttcggtcccagcctccccaggcagcagtgccagc
agcctgaccatagtgacagccatgagcagcaactctgacagtggcgccagtgatggtaat
gtctgcaggggaggagaggagctgacccagagccctaagatgtctgtggagagcaactcc
atcctcatcgcaggcttaggggacaacatgccgatgtaccatcttccacaagagaccact
cctcatacgctcatgttccccctcacctaccccctccgccctctacaggggcttccctct
ccaaacccgcccctctcgctggacccgcaggtcattgagcctatgctgattcagcaggcc
tctcctacccgggcccgctctccggacgtcatctcgtctgcctccacggccatgtctcag
gacatacctgagatagcctctgagacgctgcagcgaggcctgggggggatgtctggagct
gaatctcgagaaactctcccggccctccacacagacagcatggcttctgcagcctcagct
cttcacctcctctctccacgaaaccggaacagctctggccatctgcccctggagctgggt
gctgtagtaggagcagtggaggcggaacagaggctcagtaacaccccctcactactggag
aacgccctgtcacaggagaatgctgctgccgctgcctcctgctcagacaacaacgtgagc
cacccgtggcctgcagctcctgacatcacacgggaaacacgcaacagcctgcgagacaat
ggcctgggagactgttcgagggaggaaactaaggacagacacatgtcctctccataccac
agacgcacctaccacttaacccagaatgacagtcaggacgccagtgcagaacagagtgac
catgacgatgaggtggccagtctagagtcgtcttcagggaactgtggagccaggtcgtct
caaagactgccagtgaaggagtggaagagttctcccagaggctcccctaaacttaagagg
aagagtaaaaaagatgacggggatgcatctcatgcctctcagtccaggcagcctgagcag
catcatcaacagatgaacccagaggtgctggaagaactcctgattttgctccgtaaccag
cagagggagatagcggagctccatcagagtcagctggagctgcttcagagagtgacgggc
cacatggatgccgtgcagagctctgtcatagcccacgtagagcacgtcatggtcagccag
caggagcacgaacagaggaggatggagagaatcctagcagagggacacacccgtaaccag
cagctccaggagcatctctcgcagcagctaggtcaaactctcagtaacaccctttgtaat
cggctggacaagactctccgagaggagatgaagaagactgttcctcacactatcaccaag
agcctggagcctgtcactgcccaaatgagtaacaccattgctgctaagctgacggctgtg
gaggcagcactgaaggagaacgttagcaaagttgtgaagtcaaagaacaccacagatgct
attggccgagcagctgccgaggcaatgcaggggcctatccaggctgcctacaaggatgct
ttccagggcattgtgctgcctgtgtttgagagaggctgccagtctatgttccagcagatc
aatgagagcttcaagcagggcacccatgagtatatccagcaactggagacccatgtgaag
aacaagaagcagcatgagcaggaagcacgggatcctatgattggccagctgcaacagatg
attgacacgttccagaactcaacggatcagctggccaccaccatcacagcaagtgtccgc
tctgaggtccagcatcagctccacatgacggtgggaaatttgcaggactcgatcctgacc
caggtgcagcgcattgtgaagggtgaggtgagtatggccatgaaggagcagcaggcagct
gtgaactccagcatcatgcaggccatgcgctctgctgcaggcacgcctgtccccaccgca
cacctggactaccaggcccagcaagccagcatcctgcagctgctgcagcagggacagctc
aaccaggccttccaacaggccctgtcagcctctgacctgaacctggttctgtatgtgtgc
gagaccatcgactcccagcaggtgtttggccagcatccctgccccctcatccagccagtg
ctgctgtccctaatacagcagctgtccactaacctggccacacgctctgagctcaagatc
agttacttggaggatgctgtgatgaacctggaccatggtgatccggtgacgagggaccac
atgagtgcggtgctgtcccaggtccgacagaagctgttccagttcctgcagtcagaccca
cacagtcctctcagcaagagagcccggcgcctggtgatgatgcttcagggcctggtcaat
cactag
DBGET
integrated database retrieval system
