Oncorhynchus keta (chum salmon): 118396816
Help
Entry
118396816 CDS
T09424
Symbol
npas1
Name
(RefSeq) neuronal PAS domain-containing protein 1 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118396816 (npas1)
Transcription factors [BR:
oke03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
118396816 (npas1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
118396816
NCBI-ProteinID:
XP_052323268
LinkDB
All DBs
Position
18:6642741..6678741
Genome browser
AA seq
780 aa
AA seq
DB search
MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMCTFASQGDPPWCPLLEGENHCSKVRRSSHSLA
TDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVSIYLGLSQVELMGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLAGTPEPAPSSPLSPGNEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVRVIHVTGRIRCRPAMVPGSARSVRRPMGLVALAHTLPPS
TLNEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQS
HEDLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYIISRTELPDT
PLDLLQLPESLRAERLKASSSPSELTPQARGPQPMKSSVCKGDPDSKLREIYNPGVQSGD
RRKRPLRSDSEGAPPETRRRLEEFRQREGSVSAASDLGSESEGEERAWEQGGDSARVKRE
EGPSKRGGETPVRGGGVHNGRAVIQHLKSVVSSPLSGPHNIKTEHEALAAGGRWTHTHTS
SHTQPPPSHTHTPCGSLNGDSPPTPIPDSSSSSEAPPKGIFTPPSPAMSPPMSGSSTLPC
EERGMLSGGRVGGPDFELLQRLAAGGAAGRVLFHPLTLGPQGPQSLYAPSTIRYAPPELP
PSHLGAEGLRADHHKGPPAFFPHLQRLAGLPSFSGFSASDNPFNPFCMNGLRGAAGSEED
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatgccgttcgtcagcgagggaaagtgtgtgagcgtggagtgggacttccta
cagggactactggccaaaccccccaccctgccctgtttgcagaacctgcggaaggagaag
tctcgtaatgccgctcgttcccgtcgcggcaaggagaactttgagttctttgagctggcc
aagatgctccctctccccggggccatcaccagccagctggacaaggcctcggtcatccgc
ctcaccatcagctacttgcacatgtgcaccttcgccagccagggagacccgccctggtgc
cccctgctggagggagagaaccactgcagcaaagtgcgacgctcctcccactctctggct
actgacatgtttgaacagcacctgggagcacacctgttacagtctctggacggctttgtg
tttgtggtaagctcggagggacgattcctctacatatcagagactgtttccatctacctg
ggcctctcacaggtggagttgatgggcagcagtgtgtttgactacatccacccagcggac
catgtggagatggctgagcgtctgggcatcaggccccacctgagggccgaggctggctgc
cacgtggcccccgagagcgcttccagctctgcctccacatcctccctggccgggaccccc
gagcctgccccctcaagccctctctctccagggaacgaaccgcctgaccgaggcttcttc
atccgtatgaagtccaccctcaccaagagaggcctccacgtcaagtcctcgggctacaag
gtcagagtgatccatgtgaccgggcgaatccgctgtcgccctgccatggtgccaggctcc
gcccgctcggtgcgtcggccaatgggcttggtggcccttgcgcacacgctccctccctcc
acgctgaacgaggtgcgcatggaaagccaaatgtttgtcttccgggtcaacatggacctg
caggtcacctactgcgagaacaggatctcagagtacatggacctgagcccggcagaggtg
gtgggacacacctgctaccacttcatccacgtggaagacctggataacatcagacagagc
catgaggacttgttgaggaagggtcaggtggtgaccgggtactaccgttggctccagagg
agagggggttatctgtgggtccagtcctgtgccaccgtctccatcaaccacaaagccccc
cacgaacgcaacgtcatctgggtcaactacatcatcagtcgaacagagctcccagacact
cccctggatctgctgcagctcccagagagtctgagggcggagcgtctgaaagccagctcc
tccccttcggaactcacgccacaagcccggggtccacagccaatgaaaagctctgtgtgt
aaaggtgaccctgactctaaactgagagagatctataatcccggagtccaatcaggggac
aggaggaagcgtccgctgcggtctgactctgaaggcgctcccccagaaacgcggcgtcgc
ctggaagagttccgccagagagaggggagtgtgtccgccgcctcagacctgggcagtgag
agcgagggagaggagagagcgtgggagcaggggggagacagcgcgagggtcaaacgagag
gaggggccttcgaaacgaggtggggagaccccagtgaggggcggcggggtgcacaacggc
cgtgcggtaatccagcacctgaagagtgtagtgtcttcgcctctctctggtccccacaac
attaagactgaacatgaggcactggctgcagggggtcgctggacacacacacacacctcc
tcacacacacaacccccaccctcgcacacacacaccccttgcggtagcctgaacggcgac
agtcccccgacccctatcccagactcctcctccagcagtgaagccccacccaaaggtatt
ttcaccccgccctcccccgccatgtctcctcccatgtccggctcctccactctaccctgt
gaggagcggggaatgttgtctggaggccgggtgggcgggcctgactttgagctgttgcag
agactggcagcggggggtgctgcaggacgggtgctgttccaccccctgaccctcggcccc
caggggccacagagcctgtacgcccccagtaccatccgctatgcgcccccagagctgccc
ccctcccacctcggtgctgaggggctgcgcgccgaccaccacaagggccccccagccttc
ttcccccacctccagaggctggccggcctgccctccttcagtgggttctccgcctcggac
aatcccttcaaccccttctgtatgaacggactgaggggggccgcaggctccgaggaggac
tga
DBGET
integrated database retrieval system
