Oncorhynchus keta (chum salmon): 118396905
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Entry
118396905 CDS
T09424
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118396905 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118396905 (dhx36)
03012 Translation factors [BR:
oke03012
]
118396905 (dhx36)
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118396905 (dhx36)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118396905 (dhx36)
Translation factors [BR:
oke03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118396905 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
NB-ARC
ATPase
AAA_16
NPHP3_N
DUF7428
Motif
Other DBs
NCBI-GeneID:
118396905
NCBI-ProteinID:
XP_052324499
LinkDB
All DBs
Position
18:45974839..46029592
Genome browser
AA seq
1078 aa
AA seq
DB search
MSYGGYGGRGGRRGGRRGGRGFGRDGSRERWDRLAGSSGGGHPRSTETESREDRGERGGR
GGGPNRPPPHLKGREIGLWYAKWGGLKRKENERKSRAVVQMDESREQHITNLLNTVQRGP
TCPAREAHPSTSEHWRSTPSAPDSGSHCYFDGDEPSQDVLKIDLKQEKKEDEDERPVQNT
PLTSQRYFPQDVLKAEPQEEREEKERRGKDKDLEYLFQEVVRENALDQQLKRDLERKKAD
SKYLDMLKFREKLPSFGKKEELVKLIRSSQVLVVSGETGCGKTTQVTQFILDDYIERGMG
SVCRVVCTQPRRISAISVAERVAAERAESVGDGNSCGYQIRLQSRLPRKQGSVLYCTTGI
ILQWLRSSPLLSTISHLVLDEIHERNLHSDVLLIIVKDLLRVRQDLKVILMSATLNAEKF
SKYFNNCPMIHIPGMTFPVQEFLLEDVLEMIRYRPQKKEQRPRWKRGFMQGQNSRPEKDQ
KEAEYKESWPCYARTLRDKYSDRTIDVLEMMDDDDKIDLELIVQLIRHIVLSQEEGAILV
FLPGWDNISGLNDLLMAQQMFKSDGFVIIPLHSLMPTVTQTSVFKRPPPGVRKIVIATNI
AETSITIDDVVFVIDGGKIKETHFDTQNNISTMTAEWVSLANAKQRRGRAGRVCPGKCYH
LYNGLRASLLDAYQLPEIMRTPLEELCLQIKILKLGQIAEFLRKALDPPTEEAVTLAITH
LMDLNALDRSEALTPLGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPFFI
PMGKEKMADFRRRTLSRDSKSDHLTIIYAFTGWEEAKRRGYKFEREFCWDNFLSANTLQM
LHNMKGQFAEHLLGAGFTSSKNPQDPESNTNSDNEKLIKAVIVAGLYPKVAMIKPSGSKK
RPVRVYTKTDGKVCIHPKSVNAEETQFNYTWLIYHLKMRTSSIFLYDCTEVSPFSLLFFG
GDVTIQMDQDQETIAVDDWIVFQSPARIAHLVKNLKKELDSLLEEKIRSPAPVDWSNRQS
KDCAVITAIIDLITTQERPNVNARNTEPRGRRQYHNNDDGDEYENCCISSQPREKLRP
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggaggttatgggggcagaggcggccgacgaggtggccgaagaggaggtcga
ggattcggacgggatgggagccgggagaggtgggaccgcctagctgggtcgagtggtggt
ggacacccgcggagcaccgaaacggagtcgagggaggaccggggagaacgaggagggaga
ggtgggggaccaaaccgtccacccccgcatctaaagggccgggagatcggactgtggtac
gccaaatggggaggcttgaagaggaaagaaaatgagagaaaatcgcgggcagtggttcag
atggatgagtccagggaacagcatatcactaatctgctgaacactgtccagagaggaccg
acatgcccagccagggaggcccacccctccacatctgagcactggcgttcaaccccgtca
gcaccggacagtggcagccactgttactttgatggtgatgagccctctcaggatgtcttg
aaaattgatctcaaacaagagaagaaggaggatgaggatgagaggccagtacagaacact
ccactcacatcacaacgttacttcccacaggatgtccttaaagctgaaccccaagaagag
agggaggagaaggagaggagagggaaggataaagacctggagtacttgtttcaggaggtg
gtcagggagaatgccctggaccagcagttaaagagagatctagagaggaagaaggcggac
tctaaatacctagacatgctgaaattcagggaaaagcttccatcctttggaaaaaaagag
gagttggtgaagttgatcaggtccagccaggtgctggtggtcagtggagagacggggtgt
ggtaagaccactcaggtgacccagtttatcctggatgactacatagagaggggcatgggt
tcagtctgcagggtggtctgcacccagccacgtcgcatcagtgccatatctgtagcggag
cgggtggctgcggagagggctgagagtgtaggggacgggaactcatgtggttatcagatc
cgcctgcagagtcggttaccacggaaacagggctcggtgctgtattgtacaacgggtatt
attctacagtggcttcgctcttcccctctgttgtccaccatcagccacctggttttggat
gaaattcatgagaggaaccttcactctgatgttctactcatcattgtcaaagacctgctc
cgagtccgacaggacctcaaggtcatcctcatgagtgccacgctcaacgctgagaagttc
tccaaatactttaataactgtcctatgatccacatccccgggatgaccttcccagtgcaa
gagttcctactggaggatgtgttggagatgattaggtaccgtccccagaagaaggagcag
aggcccaggtggaagagaggtttcatgcagggtcagaactccagaccagagaaggaccag
aaagaggccgagtacaaggagagctggccctgctacgcccgcacactacgagacaagtac
tctgacagaaccatagatgtgttggagatgatggacgatgatgataagattgaccttgag
ctcatcgtgcagctgatcagacatatcgtgctcagccaggaagaaggagccatcttggtg
ttcctgccaggttgggacaacatcagtggcctcaatgacctcctcatggctcagcagatg
ttcaaatcagatgggtttgtgatcattcctctgcactccctgatgcctactgtcacccag
acctcggtgttcaaaaggccccctccaggagtcaggaagattgtcattgccaccaatatc
gctgagaccagtattaccatagatgatgtggtgtttgtgatagatgggggaaagattaag
gagactcactttgacactcagaacaacatcagcactatgactgcagagtgggtcagcctg
gccaatgccaaacagagaagaggacgcgctggcagggtgtgtccagggaagtgttatcac
ctgtataatggcctgagggccagtcttctggatgcctaccagctgcctgagatcatgcgc
acaccattggaggaactgtgtctgcagatcaagatcctcaagctgggtcaaatagcagag
ttcctgaggaaagctctggaccctcccacagaggaggctgtcactctggccatcacacac
ctgatggacctcaatgctctggaccgctcagaggctctgaccccattagggttccacctg
gccaggctgcctgtagagcctcacatcgggaagctgatcctgtttggtgctctgctgggc
tgtttggaccctgtcctcactatcgctgcctctctcagcttcaaggaccccttcttcata
ccaatgggtaaggagaagatggcagactttaggagaagaactctgtccagagactcaaag
agtgaccacctcaccatcatctatgccttcacaggctgggaggaagctaagcgacgcggc
tacaagtttgaacgagagttctgctgggacaacttcctgtcagccaatacactccagatg
ctgcacaacatgaagggtcagtttgccgagcacctgttgggggctggcttcaccagcagc
aagaacccacaagaccctgaatctaacaccaactcagataatgagaagctgatcaaggca
gtgatagtggcaggtctctaccccaaagtggccatgatcaaacccagcggcagcaagaag
agaccggtgagggtgtataccaaaaccgatgggaaggtgtgtattcaccccaagtcagtg
aatgctgaggagacccagtttaactacacatggctcatctatcacctcaagatgaggacc
agcagtatcttcctgtacgactgtacggaggtgtctccgttctccctgctgttctttgga
ggtgacgtcaccatacagatggatcaggaccaggagaccatcgccgtggacgactggatc
gtgttccagtcccccgcacgcatcgctcacctcgtcaagaatctgaagaaggagctggac
tctctattggaagagaagatccgaagccccgcccctgtggactggagcaaccgccaatcc
aaagactgtgccgtcatcacagccatcatagacctcatcaccacccaggagaggcccaac
gttaacgcgaggaacactgagcctagaggacgccgccagtatcacaacaacgatgatggt
gacgagtacgagaactgctgcatctcttctcaacccagagaaaagctcaggccatag
DBGET
integrated database retrieval system
