Oncorhynchus keta (chum salmon): 118397027
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Entry
118397027 CDS
T09424
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04136
Autophagy - other
oke04140
Autophagy - animal
oke04145
Phagocytosis
oke04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
118397027 (atg16l1)
04140 Autophagy - animal
118397027 (atg16l1)
04136 Autophagy - other
118397027 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
118397027 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118397027 (atg16l1)
03029 Mitochondrial biogenesis [BR:
oke03029
]
118397027 (atg16l1)
Membrane trafficking [BR:
oke04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
118397027 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
118397027 (atg16l1)
Mitochondrial biogenesis [BR:
oke03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
118397027 (atg16l1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_IFT122_1st
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
WD40_Gbeta
EIF3I
DSE1_N
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_VPS8
ANAPC4_WD40
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_NOL10_N
Beta-prop_NWD2_C
CFAP251_N
Beta-prop_IFT140_1st
eIF2A
WD40_RFWD3
Beta-prop_ACSF4
Tricorn_2nd
Beta-prop_HPS5
DUF4200
ADIP
CCDC22_CC
Beta-prop_SPT8
NET2A
CCDC93_CC
Par-4_C
Beta-prop_DCAF12
Uso1_p115_C
CC_Bre1
STX6_10_61_N
PUMA_CC
CENP-F_leu_zip
DUF7310
CCDC146_CC_N
6BHPP
CCDC39
FKBP15
BEGAIN_coil
CEP135_N
CLIP1
HEF_HK
Motif
Other DBs
NCBI-GeneID:
118397027
NCBI-ProteinID:
XP_035647315
LinkDB
All DBs
Position
18:1399105..1450428
Genome browser
AA seq
621 aa
AA seq
DB search
MAERRVECSWKRHVGEQLKQRDRVQRQAFEEIIHQYNRLLEKSDLQAVLSERYQSDKYDF
QNRHDGSPGADSSRSDNLQQEMAQMRIRHQEELTELHKKRGELAQSVIELNHQIQQKDKE
IQHNEAKMQEYQRQIAELEGECRELRGQLQDLEQANQTLKDEYDALQITFGALEEKLRRT
TDDNQELVSRWMAEKSQEANKLNAENEKDCKRRQAKLQKELADAAKEPLPMDPDDDIEVL
AEDSGKGTREASPNRPLSRTPSKRISGQPPQSGLLDSISNIFGVSESVHPGLLPPDSRRR
PGNSYGTSPENTETTSGVCADVRVPSTALHVFEAHDGEVNAVRFSPGSRLLATGGMDRRV
KLWEVVSGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTG
HSGKVLAARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGH
FDKKVRFWDIRAESIVCELELLGRVTSLDLNHDRTELLTCSRDDLVKIIDLRSNAVRQTF
SAQGFKCGADWTRVTFSPDGSYVAGGSADGALYVWNVLTGKLERTLDKNHCSAINSVSWS
PSGAYVVSVEKGGKAVLWSDM
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacgtcgtgtggagtgttcatggaagaggcacgtcggagagcagctgaagcag
agggaccgtgtgcagaggcaggccttcgaggagatcatccaccaatataaccgtctcttg
gagaagtccgatctacaggctgttctttcagagagataccagtcggacaaatatgacttt
cagaacagacatgacggcagcccgggggcagactcgagtcgcagcgacaacctacagcag
gagatggcccagatgcgaatcaggcaccaggaggagctgacggagcttcataagaaaagg
ggcgagctggcccagagtgtgattgagctgaaccaccagattcagcagaaggacaaggag
attcagcacaatgaggccaagatgcaggagtaccagcggcagattgccgagctggaggga
gagtgccgggagctgcgtggacagctgcaggatctggagcaggctaaccagacgctgaag
gatgagtacgacgccctgcagatcaccttcggtgccctggaggagaagctgcggcgcacc
accgatgacaaccaggagttggtgtcgcgctggatggctgagaaatcccaagaggccaac
aagctcaatgcggaaaatgagaaagactgcaagcgcagacaagccaagcttcagaaggag
cttgcagacgctgcaaaggagcccctgcccatggacccggacgacgacatcgaggttcta
gctgaggattctgggaaaggcactagagaggcctctcccaaccggccgctcagccgcacc
cccagtaaacgtatctccggacagcctcctcaaagcggcctgttggactcaatctccaac
atatttggcgtatctgagtctgtgcatcccggactccttcctccagactccaggcgtcgt
cctgggaactcgtacggaacatcacctgaaaacacggagactacctccggagtgtgtgcc
gatgtccgcgttccctccactgccctccatgtatttgaagcccatgatggggaagtgaat
gcggtgcggttcagcccaggctcccgactcctggccactggagggatggaccgcagggtc
aaactgtgggaagtggtctcgggtcgctgtgaacctaagggtgctctgactggcagcaac
gccgggatcaccagtatagagtttgacagtgctggctcctacttgcttgctgcatccaat
gactttgccagtaggatctggactgtggatgactacagactgaggcacacgctgacaggc
cacagcgggaaggtgctggcggctcgctttctcctggacaacgctcgtatcgtctccggg
agctacgacaggactctgaaactgtgggacctgcgcagcaaagtctgcatgaagactgtg
tttgctgggtccagctgtaatgacatagtttgcacagagcagtgtgtcatgagcggccat
tttgataagaaagtgcggttctgggacatcagagcggagagtatagtttgcgagctggag
ctcctgggccgagtcacgtctcttgacctgaaccacgaccgcaccgagctgctcacctgc
tcccgggacgacctggttaagatcatcgacctgcgcagtaacgcggtccgccagaccttc
agtgctcagggcttcaagtgtggcgctgactggacccgagtcaccttcagtcctgatggc
agttacgtggcggggggctctgcagacggtgccttgtatgtgtggaatgtcctgacgggc
aagttggagcgcaccctggacaagaaccactgctcggccatcaactcggtgtcctggtcg
ccatcgggagcctacgtggtcagtgtggagaagggcggcaaggccgtcctctggtctgat
atgtga
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