KEGG   Oncorhynchus keta (chum salmon): 118397038
Entry
118397038         CDS       T09424                                 
Name
(RefSeq) high mobility group protein B1-like
  KO
K10802  high mobility group protein B1
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03410  Base excision repair
oke04140  Autophagy - animal
oke04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    118397038
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    118397038
  09143 Cell growth and death
   04217 Necroptosis
    118397038
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oke03036]
    118397038
   03400 DNA repair and recombination proteins [BR:oke03400]
    118397038
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oke04147]
    118397038
Chromosome and associated proteins [BR:oke03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    118397038
DNA repair and recombination proteins [BR:oke03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     118397038
   MMR (mismatch excision repair)
    Other MMR factors
     118397038
Exosome [BR:oke04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   118397038
SSDB
Motif
Pfam: HMG_box HMG_box_2 HMG_WDHD1 HMG_box_5 Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 118397038
NCBI-ProteinID: XP_035647338
LinkDB
Position
18:2194619..2197306
AA seq 194 aa
MGKDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFE
DMAKQDKVRYEREMKNYIPPNGQKKKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGLS
IGDTAKKLGVMWNSSAAEEKKPYEKKAATLKEKYDKDIASYRTNGRVDTASSAAADDDEE
EDDEEDDDDEDDDE
NT seq 585 nt   +upstreamnt  +downstreamnt
atggggaaagatcctaggaaaccgagaggcaagatgtcgtcatatgcttacttcgtgcag
acctgcagggcggagcataagaagaaacacccagaagccagtgtcaacttcgctgagttc
tccaagaaatgctcagagagatggaagcccatgtctcctaaagaaaaaggcaagtttgaa
gacatggcgaagcaagacaaggtccgctacgagagagaaatgaagaactacatcccaccc
aatggccagaaaaagaagaggttcaaggatcctaatgcccccaagagaccaccgtctgcg
ttcttcatcttctgtgctgacttccgggccaagataaagagtgagcacccaggcctgtcc
attggagacactgctaagaagctgggagtgatgtggaacagctctgcagctgaggagaag
aagccatacgagaagaaagccgccacgctgaaggagaaatacgacaaggatatcgcctca
taccgcaccaatggtagagtggatacggcctcctccgcagctgctgacgacgacgaagaa
gaggatgatgaggaagatgacgacgatgaggatgatgacgagtag

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