Oncorhynchus keta (chum salmon): 118397090
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Entry
118397090 CDS
T09424
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04270
Vascular smooth muscle contraction
oke04625
C-type lectin receptor signaling pathway
oke04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
118397090
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
118397090
09153 Circulatory system
04270 Vascular smooth muscle contraction
118397090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118397090
Membrane trafficking [BR:
oke04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
118397090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
PH
Motif
Other DBs
NCBI-GeneID:
118397090
NCBI-ProteinID:
XP_035647433
LinkDB
All DBs
Position
18:4483923..4552061
Genome browser
AA seq
1464 aa
AA seq
DB search
MSDTQSSITDRFSNKANRSSSILSKDHPPDKKPKSDKPAVSSSHEFDPTDVLVQKSDCVL
VEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERAGVQTGDRIIKVN
GTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSECEAKLGFPGPQAGLSPVSSP
NAPGQPTGERPYSPHDRITSPLPIWEENNSVHSQKVDILQKMLSKEQQDLQAMKEEYSRN
PTPKLLKDIQEAKKHIPQLQWQLSKATGGAQDALQLGDGDDGSMVDMDHTPSSRGDSSND
LSWSSSTMSPVLRSFAAASPESLCQRDMLSYHSPKSTPRDSFNSCHSPDPEDTPDLDSLS
PSAVNSPSSRFVSQIIGAEDDYFDSDQEQVNGQCSCFQSMELLKSRPAHLAAFLHHVVSQ
FDPAPLLCYLFADLCKQTNSKETRRVFMDFHSFFIDRGANLKVAVPESISSDLDRRRTEL
IPEEQNRQLVQMMQDTLLPDIQRNLEDFRQKRSMGLTLAEGELARLDTERVRDRVALERE
RSCAENIITKIEDVLLTTQSTEEEKCTTMQYVILAYMKRLGVKVKEPRGLEFKRVRLNFL
PKIKKSVKTEKEGGEEKVKRTRFPSILGPPRRPSRVDPTSIGKAMDLNKPRPQKQLSQPC
LGAVEHLEAGRLTASQSSEGSELTHSSNTNATSPTNSHASDGGSRDSEFVLTPNSAFLKL
SEGLGDLDSLQYTPNTHFDYSLSPYSLDQLQEEDRESRILEGTPKSIRRLDGLGSTEVQS
EDDQGGTDSEHDPLNWQQLVGREVLAGLGAHEIKRQEVINELFYTERAHLRMLKVLDNIF
YQKLTREAILPPADIKNIFTNLGDIVQLHVLISEQMATIRKRNETSVIDQIGDDLLSWFS
GGEEEKIKQAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNRLCRRLQLKDIIPVE
MQRLTKYPLLLENIAKYTDDTMEKDKVKKAGDCCRRILNHVNQAVKESENKQRLEDYQRR
LDLSSLKQTENPMITELKNLDLTKKKMIHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQ
DERLVLKCHSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFVLSMSDNGAQIYELM
AQTVSEQRMWQRQITQRADAMKVKPHSGIHLPQTDVEIIAADVARLGKDPDRISSGSSQS
IDKECSAASGGVMQTSLPNAKSFVGLKPEEEEPSREEGLYGDPDLADRLPFRMAVDGFSE
SDGLGFSPSRADDALKTLSALKQVLVTQLMSQEDGERAGRSSSGGGRLLRTTSLRTPVDS
RARVAVQKGSGMCTQASHPEDPAQDLVSGDTGFFESPEDYAGYLVLEGYGGSGESSTDDD
LQATGKQLSASRGCGAGDSGISLRFSSASQAGSISSFSRQVLSHLRNLQTNLNHLKEIEA
KYHSLLRQRPARSSTGTDINKDKR
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagtccagtatcactgataggttttccaataaagcaaacagaagcagt
agcattctcagtaaagaccacccccctgacaagaaacccaaaagtgataaaccggcagtc
tcctcttcacatgagtttgaccctacagacgttctggtgcagaagagtgactgtgttcta
gtggaggggaagcccgagtcctgtgggcttgtccagcgatgtgtgatcattcagaaagat
gagaatggctttgggctgacggtgagcggagacaacccagtttttgtgcagctcgtcaag
gaagatggcgctgcagagcgtgcgggtgtacagacaggtgaccggatcatcaaggtgaac
gggaccctagtaacacattcaaatcacgtggaagtagtaaagctcatcaaatcgggctcc
tatgtggccctcacagtgttggggcgaccccctgggttgccccagatccccctatcggag
tgcgaggctaagctggggttcccggggccccaggctgggttgtcccctgtctcctctcca
aacgctcctggacagccaacgggggagcgcccatacagcccccatgaccgcatcacctct
cctctaccgatatgggaagagaacaacagcgtacacagccaaaaggtggacatcctgcag
aagatgttgtccaaggagcaacaagatttgcaggcaatgaaggaggagtacagcaggaat
ccgacgccaaaactactgaaggacatccaggaagccaagaagcacattccacagctgcag
tggcagctcagtaaggccactggaggagcacaggatgccctgcaattgggtgacggagat
gacggtagcatggtggacatggaccacaccccttcctccaggggagacagtagcaatgac
ctctcgtggagcagcagtaccatgtcccctgttctccgcagttttgcagctgcctccccg
gagagcctgtgccaaagagacatgttgtcctaccacagcccaaagagcacgccccgagac
agcttcaactcctgccactcccccgacccagaagacactccagacctggactcgctgtcc
ccctctgctgtaaacagcccttcctcacgcttcgtctcccagatcattggagctgaggac
gactactttgactctgatcaagaacaggtcaatggtcagtgcagctgtttccagagcatg
gagctgctcaagtccagacctgctcacctggcagctttcctgcatcacgttgtctcgcag
tttgaccctgcaccgctgctctgctacctcttcgctgacctgtgcaagcaaactaactcc
aaagaaaccagacgggtgttcatggacttccacagcttcttcatcgaccggggagctaat
ttaaaagtagctgttcccgagtccatctcctctgaccttgaccggcggaggacggagctg
atccctgaggagcagaacagacagttagtccagatgatgcaggacaccctgctccctgac
atccagaggaacctggaggacttcaggcagaagcgcagtatgggcctaaccctggctgag
ggggaactggcccggctggacacggagcgcgtcagagaccgggtagcactggagagagaa
cgctcctgtgctgaaaacatcatcaccaagatcgaggatgtcctgttgacaacccaatcc
acagaggaggagaaatgcactactatgcagtatgtcatcctcgcgtacatgaagcgcctt
ggagtgaaagtcaaagagccacggggcctagagttcaaaagggtccgcctgaacttcctc
cccaagatcaagaagagcgtcaagaccgagaaggagggaggggaggagaaggtgaaacga
accaggtttcccagtatcctcgggcctccgcgccggcccagccgcgtcgaccccacgtcc
atcggcaaggccatggacctcaacaagccgcggccccagaagcagctgtcccagccctgc
ctgggggccgtggagcacctggaggcgggtcgcctgacggccagtcaatccagcgagggc
tcagagctcacacattcctccaataccaacgccacctcgccaaccaacagccacgcctca
gatggaggcagcagagactctgagtttgttctgacccctaactctgccttcctcaaactg
agcgaaggtcttggagacctggacagtctacagtacactccaaacacacactttgactac
agcctgagcccatacagcctggaccagctgcaggaggaggacagggagagcagaatcctt
gaaggaacacccaagtctatcagaaggttggatggccttggttctacggaggtgcagagt
gaagacgaccaaggaggcacggactctgagcacgaccctctcaactggcagcagctggtg
ggacgtgaggtcctggctggactcggggcccacgagatcaagagacaggaagtcattaac
gagctgttctacactgagagggcccacctgcggatgctcaaagtgctggacaacatcttc
taccagaagctcaccagagaggccatactgcctcctgccgacatcaagaacatcttcacc
aacctgggggacattgttcaactgcatgttttgatatctgagcaaatggcaacaatccgg
aaaaggaacgagacatccgtaatcgaccaaataggagacgacttgctgtcctggttcagc
gggggcgaggaggagaagatcaagcaggcggtgggcacgttctgcagcaaccagcccttt
gctctggagctcatcaagagcaggcagaagaaggactcgcgcttcacctccttcatgcag
gaggctgagagtaaccgactgtgtcgaagactccaactgaaggacatcattcccgtggaa
atgcagaggctcaccaagtaccctctcctactggaaaacattgccaagtacacagatgac
accatggagaaagataaggtaaagaaggcaggcgattgctgcaggaggattctcaaccac
gtcaaccaagcggtgaaggagtctgaaaacaaacaaaggctggaggactaccagaggcgg
ctagacctctcgtctctgaagcagacggagaaccccatgattacagagctcaagaacctg
gacttgaccaagaagaagatgatccacgagggaccactgtcatggaaggtcaacaaggac
aagactattgagctgtacaccctgctcttggaggacatcctggtgctgctgcagaagcag
gacgagcggctcgtcctcaagtgccacagcaaaaacctgtcgggcaccgccgacaccaag
cacatcttcagccccatcatcaagctcaacgcggtgctggtgcgctctgtggccacagac
aacaagtcgttctttgttctctcaatgtcggacaacggggcacagatctacgagctgatg
gcccagaccgtatcagagcagagaatgtggcagcggcagatcacccagagagcggacgcc
atgaaagtgaagccgcacagcggcatccacttacctcaaacggatgtggagatcatcgct
gcagacgtagcccgactcggtaaggacccggaccgcatctcctctggaagcagccagtct
atagataaagagtgcagcgctgcctctggtggcgtgatgcagacctctctcccaaatgcc
aagtcctttgtaggactcaagcccgaagaggaggagcccagccgggaggaggggctttac
ggggacccggaccttgcagatcggctgcccttccgcatggccgtagacgggttcagcgaa
tcggacgggctgggcttcagtccttctagggctgacgatgccttaaagacattgtcggcg
ctgaagcaggtcctggtgacccagctcatgtcgcaggaggacggtgagcgtgctgggcgc
tcctcctcggggggtgggcgtcttctcaggaccacgtccctgaggacccccgtggacagc
cgtgccagggtggctgtgcagaaaggctccgggatgtgcacccaggccagccaccctgag
gacccggctcaggacctggtgtctggggacacgggtttctttgagtcccccgaggattat
gcagggtacctggtcctggagggctacgggggctcgggggagagcagcacggacgatgac
ctccaggccaccgggaagcagctgagcgcctcgcggggctgcggggcaggagactctggg
atcagcctgaggttctcctctgcctcacaggcaggtagcatctccagcttcagccgacag
gtcctgtcccaccttcgcaacctgcagaccaacctcaaccacctcaaggagatagaggcc
aagtatcacagtctactacgccagaggccggccaggtcatcgacaggcacggacatcaac
aaagataaaagataa
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