Oncorhynchus keta (chum salmon): 118397298
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Entry
118397298 CDS
T09424
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04137
Mitophagy - animal
oke04140
Autophagy - animal
oke04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118397298
04137 Mitophagy - animal
118397298
04148 Efferocytosis
118397298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118397298
Transcription factors [BR:
oke03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
118397298
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Gene cluster
GFIT
Motif
Pfam:
PAS_11
bHLH_HIF1A
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
118397298
NCBI-ProteinID:
XP_035647811
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All DBs
Position
18:13053676..13080299
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AA seq
627 aa
AA seq
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MDTKEEPVGKRSSTDQRKVRSRDAARCRRSLETELFYKLAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSGDTSEERVTDGDEDTVDGFYPRALAGFILVMTEEGDMIYLGDSVSKH
LGIPQLELLGQSVYDFVHPCDQEELRDLLAPRPGVSKKKPAQQHTEMNFFLRMKSTLTSR
GRTVNIKSATWKVLHCTGHMRVCCSGEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTFL
TRHSMDLCFTHCDGRVSELVGYEPEDLIGKSAYKFHHALDSDHVTKSLHILLSKGQVCTS
LYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLKS
DPVSEASEETVCDSDNSSSAELSLQLKENPEDLLQLAPVSGDPIVPLTDFAEPSFGLPSS
SDSAPDFPQELCTPELWTLLSPIFSKLTSSAPALIPIEELPIEDEVAKLFAVCPDESVQK
RNQPEDMEVVDLDMLAPYISMDDDFLLSVQLPETPDSPSPEPPTATRKRSHEQDEDMPSQ
LMSQDKRPRHLVSPIQHKLLLSYALLDCLEDVDNPELELGPIPHRRSQLLTDRDPILGEA
QGLCDTAALMRDLFLSRPPDPLTSSLT
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaagaagagcctgttgggaaacggtcaagtacggatcagcggaaggtgcgt
tcccgggatgcggcgcgctgcaggcggagtctggagacggagctgttctacaagttggcc
cacaccctgcccctaccccgcagagtctccgccgacctggacaaggccgccatcatgaga
gtgacgctcagcttccttcgcatgcaccacctccgctcaggggacacgagtgaggagcgc
gtcacagatggggacgaggacacggtggatgggttctacccccgggcgctggcaggcttc
atcctggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcagcaaacac
ctgggcatcccacagctggagttgctgggtcagagtgtgtatgactttgtccacccatgt
gaccaagaggagctacgggatctcctggcgcctaggccaggtgtgtccaagaagaaacca
gcgcagcaacacacagagatgaacttcttccttaggatgaagagcactctgactagtaga
gggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccacatg
cgtgtgtgctgcagtggcgaggattcatcacctcctgcaggcagcttcatgacagtgctg
tgtgagcccatcccccatccgtctagtgtggagttccccctggaccggagcacgttcctc
actcgacacagcatggacctgtgcttcacacactgcgatggcagggtgtcagagctagta
ggatacgagccagaagatctgattggcaaatctgcctacaaattccatcatgccctggac
tcagatcatgtgaccaagagcctgcacatccttctgtccaaaggccaggtgtgcaccagt
ctataccgtttcctggctaagagtggaggctttgtgtgggcagagacccaggctacagtc
atctacaacaacaagacctctcaaccagaggctgtggtctgtcttaactttatcctcagt
gtggtggagcaggcggatgtggtgttctcagtagagcagactggctgtgggctgaagagt
gatcctgtctctgaggcctccgaggagaccgtgtgtgacagtgacaacagcagcagtgca
gagctctccctccagctgaaggagaacccagaggacctcctccaactggcccctgtctca
ggagaccccatcgtacccctcacagactttgcggagccgtcgttcggtcttccatcaagc
tctgactccgccccagatttccctcaggaactgtgcacccctgagctgtggacgctcctc
tcacccatattcagcaagctcacctcatcagcaccagcgctgatccccattgaggagctg
ccaatagaggacgaggtggcgaagttgtttgctgtttgtccagatgagagcgtacagaag
agaaaccagcctgaggacatggaagtggttgatctggacatgctggctccgtatatctcc
atggatgatgatttcctgctcagcgtccagctccctgagacccctgacagcccctcccca
gagccccccactgctaccaggaaacgaagtcatgagcaggatgaagacatgccctcccag
ctgatgagtcaggacaagagaccgagacacttggtgtcccccatccagcacaaactgctt
ctcagctatgccctgctggactgcctggaggatgtagacaacccagagttggagctgggg
ccaatcccccacaggcggagccaactgctgacggacagagaccccatccttggtgaagcc
cagggactatgtgacactgcagccttgatgagggacctcttcttgtcccgcccacctgac
cccctgacctcctctctgacttga
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