Oncorhynchus keta (chum salmon): 118397311
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Entry
118397311 CDS
T09424
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118397311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oke04121
]
118397311
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
118397311
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
HECT type E3
118397311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
118397311
NCBI-ProteinID:
XP_035647838
LinkDB
All DBs
Position
18:13759608..13813446
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AA seq
2058 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVVGRLQSEQVKHKANSPPESRRSKSKASKAA
PSSASGQSRGHSSRSSLSLSVASFVLQGDPEAAGTSEREPTGHQSKTEGTTRGLKRNSAP
DLNTYTPTPAKKSKSNPPPRDHTTEAKKGPAKSSKKRPLAPELPTGRGQSKKSGASGASP
NLKRKKADSLPCLSSTAGSLPNRTDGRFAKPTKLASKSAASAKAGCNTVTDSSSSASTSS
SSSTGTNSATATQGARLKQGKDQNKARRSRSASSPSPRRSTREKEQAKAAVSSKFEWAAR
FSPKVNLPKPKLSLPSSSKTETASKPGPSGLQAKLASLRKSTKKRSESPPAELPSFRRST
RQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADSDNNQDGANSSAARTDEAPQGASGTA
SSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGAS
SKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALMTLLQMEHNF
DIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHSK
AILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLTQRLSHQD
KKSVESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVTPPVLSSGMFIMVVRMF
SLMCSNCPCLAVQLMKQNIAETLRFLLCGAANGSCQEQIDLVPRSPQELYELTSLICELM
PCLPREGIFAVDLMLKKGSAQATEGAIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEIS
LSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPTTGGHQEVRREDARAQLMKEDP
ELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIFFADAELLKDVLRNHAVSSHIA
SMLSSQDLKIVVGSLQMAEILMQKLPDVFSVFFRREGVMHQVKNLAESEAFLTSPPKACT
SGTASLCTTTISTANTTAATTATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKRG
PRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGKLGAQTNSTNSEPSRTAS
VSGLARALPKDSVSNNRDKIKAWIKEQACKFVARYFNNENIDGSNPALNVLQRLCTATQQ
LSLQMDGGVECLVEICSIVSESDVSSFEIQHSGLVKQLLLYLTSSSDRDLVSRDVRLKWF
LHVFYGCPTPGMEPAGRLEPSENGPLLSLVRKMNNCLSQMEQFPVKVHDFPSGNGNGSRG
SQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREED
EDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQFSLQAEEER
ESTDDEANPLGRAGIWTKTHTIWYKPVREDEDGTKDVVGGKRGRAQTAPTKTSPRNAKKQ
DELWHDGVCPSVASPLEMYLMSEPPESITFDDPSLDVNLLLRVLHSISSYWFYLYDNAVS
KEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVT
AFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREELLKQAESVMQDLGSSRA
MLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVALSNPKGSQEGTKYMFSSR
GLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRHETSIS
SHDLINIDPGVAKSIQHLEDIIRQKRRLEQDRSQTRETLQQALESLNMNGCSVEDLGLDF
TLPGFPNIELKKGGKDIPVTIYNLEEYLRLVVYWTMNEGVSRQFESFREGFESVFPLHHL
QYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFDVLSSFDAEQQRLF
LQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIM
RKKLLIAAREGQQSFHLS
NT seq
6177 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccatacagtcgtaggaaggttgcagtcagagcaggtaaaa
cataaagcaaattcccctcctgaaagtagaagatctaaatctaaggcttccaaagctgca
cccagctcagcctctggccagtccagagggcacagctcaagaagcagtctgtcactgtct
gtggcttcatttgtgctgcaaggcgacccagaggccgcaggtacatcagagcgagagcca
acaggacaccaatccaagactgaaggcaccacccgagggttgaagagaaattctgcacct
gaccttaacacctacacccccaccccagccaagaagtcaaaatccaaccccccacccaga
gaccataccactgaggccaagaaaggccctgccaaatcctccaagaagagacccttggct
ccagagttgcctacaggccgcggccagagcaagaagagcggggcctctggggcttcaccg
aatcttaaacggaagaaggctgactccctcccctgtctgagcagcactgctgggtcgctc
cccaaccgtaccgacggcagatttgcaaaacccaccaagctggcgtcgaagtcggccgcc
tcagccaaagctgggtgtaacacggtgactgactcctcctcttctgcctccacctcttcc
tcctcctccacaggcaccaacagtgccaccgccacacagggtgccaggctcaagcagggc
aaagaccagaacaaggcacgtcgttcccgctctgcctccagcccctctccacgccgaagc
acccgtgaaaaggagcaggccaaagccgccgtctcgtccaagtttgagtgggcggcccgc
ttcagtcccaaggtcaacctgccaaagcccaaactgtccctacccagctcctccaagaca
gagaccgcctccaaacctggaccctcaggactacaagccaaactagcaagtttgaggaag
tccactaagaagcgcagcgagtctcctccagcagagctccccagctttcggcggagcaca
cgccagaagaccacgggctcctgcgccagcaccagtcggcgaggctcaggcctgggcaag
cgcggggcagccgaagctcgccgacaagagaagatggctgactcggacaacaaccaggat
ggtgccaactcctcggctgcccgcactgatgaggccccgcagggggcttcgggtacagct
tctagctcagtggccggagctgtagggatgaccacatccggtgagagtgagtccgatgac
tctgaaatgggcagactccaagccctgctggaggccaggggtctacccccacacctcttt
gggcccctgggaccccgcatgtcccagctgtttcacagaactataggcagtggagccagc
tccaaggctcagcagctgctgcagggcctgcaggccaccggcgacgagtcccagcagctc
caggccgctatcgagatgtgccagctgctagtgatgggcaacgaggagacactaggaggc
tttcccgtgaagagcgtggtgcctgctctgatgacattgttacagatggagcataacttt
gacattatgaaccacgcctcccgtgctctcacttacatgatggaggcgctgcctcggtcc
tctgctgtggtcgtggatgccatcccagtcttcctggagaagcttcaggtgattcagttc
attgacgtggcggagcaggccctgactgccttggagatgttgtcaaggcgacacagcaaa
gccatcctgcaggctggtggcctggctgactgtctgctgtacctggagttcttcagcatc
aacgcccagaggaatgccttggccattgcagccaactgctgccagagcatcacccctgac
gagttccactttgtctctgactctctgccactgctgacccagagactctcacaccaggat
aagaaatctgttgaaagcacttgtctctgttttgccaggctggtggacaactttcaacac
gaggagaacctgctacagcaggtggcctcccgggacctgctgaccaacatccagcagctg
ctggtggtcaccccgcccgtgctcagctcgggcatgttcatcatggtggtgcgtatgttc
tccctcatgtgctccaactgcccctgtctggccgtgcagctcatgaagcagaatattgca
gagactctgcgcttccttctctgcggagcggccaacggtagctgccaggagcagattgac
ctggtgccccggagcccccaggagctctatgaactcacctcactcatctgcgagctgatg
ccctgcctgcccagagagggcatctttgctgtggatctcatgctgaagaagggcagtgcc
caggccacagagggggccatctggcagtggagggacgaccggggcctgtggcacccctac
aaccgcatcgacagccgcatcattgagacggcccaccagaacggagaggacgagatcagc
ctgtccaccctgggccgcgtctacactatcgacttcaactctatgcagcagatcaacgag
gacactggcacagcacggggtatccagaggaaacccaaccccttagccaaccccactact
gggggtcaccaggaggtgaggcgggaggatgcacgggcccagctgatgaaggaagaccct
gagctggccaagtgcttcatcaagaccctttttggggtgctgtacgaggtgtacagctcg
tcggcaggcccagccgtcagacataagtgcctccgagccatcctcaggatcatcttcttc
gccgatgccgagctcctcaaggacgtgctgaggaaccacgcggtgtccagtcacattgcc
tccatgctgtccagccaggacctgaaaattgtagtgggctctctgcagatggctgagatc
ctcatgcagaagctgcccgacgtattcagtgtcttcttcagaagagaaggtgtgatgcac
caggtgaagaacctggctgagtcggaggccttcctcactagtcccccgaaggcatgcacc
agcggcacggctagcctgtgtaccaccaccatcagcactgcaaacactacagcggccacc
accgccaccccagacctgggctcacctagcttccagcacagcatggacgactcactggac
ctcagcccacaagggcgattaagtgatgtgctgaagagaaaacgtctgcctaagagaggg
cccagaaggcccaagtactctcctcccagggatgacgacaaagtagacaatcaggccaag
agtcctaccactactcagtcccccaaatcctccttcttggccagtctgaaccccaagacc
tggggcaagctgggcgcccagaccaacagcacaaactctgagccctctcgcacggccagt
gtgagtggcctggcacgcgcccttcccaaggactctgtctccaacaacagggacaagatc
aaggcttggatcaaagagcaggcctgtaagtttgtggcacgctacttcaacaatgaaaac
attgatggcagcaaccccgcactaaatgtactccagagactctgcaccgccacgcaacag
ctcagcctacagatggacggtggcgtggagtgcctcgtggagatctgcagcattgtgtcg
gagtcggacgtgtcgtcgttcgagatccagcacagcggcctggtcaagcagctgctgctc
tacctgacctccagcagtgaccgtgacctggtcagccgtgacgtccgcctcaagtggttc
ctgcatgtcttctatggctgcccgaccccggggatggagccggcaggccgcctggagccg
tctgagaacgggcccctgctgtcactggtgcgcaagatgaacaactgcctaagccagatg
gagcagttccctgtcaaggtgcacgacttccccagtggcaacggcaacgggagcagaggt
tctcaggctctgaagttctttaacacacaccaactcaagtgtcagctgcagaggcacccg
gactgcaccaatgtgaagcagtggaaggggggcccggtgaaaattgaccccctggctttg
gtacaggccattgaacgctacctggtggtccgaggttacggacgaataagagaggaggat
gaggacagcgacgatgatggttcagacgatgaaattgatgaatctctggcggcccagttc
ctgaactcaggcagcgtgcgccaccggctgcagttctacatcggcgaccacctgctgccc
tacaacatgacggtttaccaggcggtgcggcagttcagcctgcaggcagaggaggagagg
gagtcaacagatgacgaggccaacccgctcggacgggccggcatctggaccaaaacccac
accatatggtataaaccagtgagggaggatgaggatggcactaaggatgtggtgggaggg
aagaggggccgggcacagactgcccccaccaagacctcaccccgcaatgccaagaaacag
gacgagctgtggcacgatggcgtgtgtcccagcgtggccagcccgttggagatgtacctc
atgtcagaacccccagagagcatcaccttcgacgacccgtctctggatgtcaaccttttg
ctgagggtgctgcactccattagtagttactggttctacctgtacgacaatgctgtttct
aaggagatcatccccaccagtgagttcatcaacagtaagctgacagccaaggccaaccga
cagctgcaggaccctctggtcatcatgaccggcaacatccccacctggctcacagagctc
ggcaagacctgtcccttcttcttcccattcgacacacggcagatgctcttctatgtgact
gcttttgaccgcgaccgggccatgcagcgcctcctcgacaccaatcctgagatcaaccag
tcagattcccaggacagccgtgtggcaccccgcctcgacagaaaaaagcgaacgataaac
cgtgaggagctgctgaagcaggcggagtcggtgatgcaggacctcggcagctccagagcc
atgctggagatccagtatgagaacgaggtgggcacagggctgggtcccaccctggagttc
tacgccctggtctcccaggagctgcagagggccgatctcgggctgtggaggggtgaggag
gtcgccctgtccaacccaaaaggaagccaagaagggaccaagtacatgttcagctccaga
gggctgtttgccgttccctttggcaggacaaccaaaccggcacacatcgccaaaatcaag
atgaagttccgcttcctgggcaagctgatggccaaggctataatggacttcagactgctg
gacctgcccctggggctgcccttctacaagtggatgctgcggcacgagacctccatcagc
tcccacgacctgatcaacatcgacccgggcgtggcgaagtccatccagcacctggaggac
atcatccgccagaagaggaggctggagcaggaccgctcccaaacgagggagaccctgcag
caggcgctggagagtctcaacatgaacggctgctctgtggaggatctgggcctggacttt
accctccccggtttccccaacatcgagctgaagaagggaggcaaagatatccctgtcaca
atctacaatctggaggagtacctcaggctggtggtctactggacgatgaacgaaggtgtg
tcccggcagtttgaatctttcagggaagggtttgagtcagtcttccccctgcaccacttg
cagtatttctaccctgaagagttggatcagctgctttgtggcagcaagtccgagacctgg
gatgtcaagaccctgatggagtgctgtcgtcccgaccacggctacacccatgacagtcgt
gctgtgaggttcctttttgacgtgctcagcagtttcgatgcagagcagcagagacttttc
ctgcaatttgtaacaggaagcccaaggctgcctgttggaggtttccgtagtctgaacccg
ccgttgaccatcgtgcggaagacatttgagtcgacggagaacccggacgacttcctgccg
tcggttatgacctgtgtcaactacctgaagctgcctgactactccagcatcgagataatg
cgcaagaaactgttgattgcggcccgtgagggccagcagtccttccacctgtcctga
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integrated database retrieval system
