KEGG   Oncorhynchus keta (chum salmon): 118397370
Entry
118397370         CDS       T09424                                 
Symbol
polr2d
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03020  RNA polymerase
oke03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    118397370 (polr2d)
  09124 Replication and repair
   03420 Nucleotide excision repair
    118397370 (polr2d)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oke03021]
    118397370 (polr2d)
   03400 DNA repair and recombination proteins [BR:oke03400]
    118397370 (polr2d)
Transcription machinery [BR:oke03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     118397370 (polr2d)
DNA repair and recombination proteins [BR:oke03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      118397370 (polr2d)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Rop
Other DBs
NCBI-GeneID: 118397370
NCBI-ProteinID: XP_035647929
LinkDB
Position
18:complement(17192308..17194701)
AA seq 143 aa
MASSGGSTTTVGDIEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSE
VFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSVE
GRFEDEELQQILDDIQTKRSFQY
NT seq 432 nt   +upstreamnt  +downstreamnt
atggcgtccagtggcggttcaacaacaactgtcggagatattgaggaggacgcgtctcag
ctacttttccccaaagagttcgagaacgcggagactcttctaaactctgaggtacacatg
cttctggagcatcgcaagcagcagaacgagagtgcagaggacgaacaagagctatctgag
gtcttcatgaaaactctgaattatactgcacgtttcagccgtttcaaaaacagagaaact
attgccagtgttcgcagcttgctcttgcagaagaagctgcataagtttgagttagccagt
ttggccaacctttgtccagaagcagcggaggaggccaaagccctcatccctagtgtggag
gggcggtttgaggatgaggagctgcagcaaatccttgatgacattcagaccaagagaagt
ttccagtactga

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