Oncorhynchus keta (chum salmon): 118397462
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Entry
118397462 CDS
T09424
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03030
DNA replication
oke03420
Nucleotide excision repair
oke03430
Mismatch repair
oke03440
Homologous recombination
oke03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118397462
03420 Nucleotide excision repair
118397462
03430 Mismatch repair
118397462
03440 Homologous recombination
118397462
03460 Fanconi anemia pathway
118397462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118397462
03032 DNA replication proteins [BR:
oke03032
]
118397462
03400 DNA repair and recombination proteins [BR:
oke03400
]
118397462
Transcription factors [BR:
oke03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
118397462
DNA replication proteins [BR:
oke03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
118397462
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
118397462
MMR (mismatch excision repair)
118397462
DSBR (double strand breaks repair)
HR (homologous recombination)
118397462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF6446
Motif
Other DBs
NCBI-GeneID:
118397462
NCBI-ProteinID:
XP_035648116
LinkDB
All DBs
Position
18:21938208..21976042
Genome browser
AA seq
624 aa
AA seq
DB search
MNSSRVQAYIWRHRRNTATVEVRLSSLELKHTFFFTLHSYKLSFNMLTKGAIEALTKCSN
DLQNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLSTQLNPMAEDNRLAPNCICQ
LKRSVTNVLKDGRRVVVILDMEVVKSADEVAGKIGEPQPYVEGSMNKGPSRAFGGKMGMP
PSAMPSTPGGSSKIVPIASLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDES
GEIRVTAFTQEVDKFYSIIETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCE
DTQDVPMVQCNFVSIADLQAREKDTILDVIGVCKSVSDVTRLNTKNNREVSKRTLNLMDQ
SGKLVEVTLWGEEAETFDGSGQPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKL
RGWYDKEGHSMAGQSLTEARTGGGGNTNWKTLADIKTEHLGHGDKADYFSCIATIVYIRK
ENCLYQACPSQDCNKKVVDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQ
ESAEAILGQNAAYLGQLKDSNEAAFEEIFQQANFHTFVFRNRVKLETYNDESRIKATVME
VKTVDHKEYSKRLIMNIRKMASAQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaacagttcgcgcgttcaggcatacatttggcgccacagacgcaacactgccactgta
gaagtgagattgtcctctcttgagttaaaacatacatttttttttaccctacatagctat
aaactcagcttcaacatgctgacaaagggagcgatagaggccctaaccaaatgctctaat
gatttacaaaaccccatacttcaattagtgaacatccgtaaaattgatggaggcagtgga
ccagcccgctttcgtctgatgatgagtgatggacagcactcaatgtcttcgttcatgctc
tccacccagctcaacccaatggctgaggacaaccgactagccccaaactgtatctgtcag
ctgaagaggagcgtgaccaatgtcttaaaggatggacggcgtgttgtggtcatactggac
atggaggtggtgaagtctgctgatgaggtggctgggaagatcggagagccccagccttac
gtggaaggctccatgaacaaaggtcccagcagagcgtttggggggaagatgggcatgcct
ccgtctgccatgcccagcactcctgggggatcgtccaaaattgtgcccatcgccagcctc
aacccataccagtcaaagtggaccatccgagcccgtgtcaccaacaagagcggcatccgc
acctggagcaactctcgtggggacggcaagctgttctccatggagattgtggatgagagt
ggagagatcagagtgactgcctttacccaggaagtggacaaattctacagcatcatcgag
actggcaaggtgttctacatctccaagggatccctgaagatcgccaacaagcagtactca
tccctgaagaatgactatgagatgaccctgaatggagagtccaccatcattccctgtgaa
gacacccaggacgtacccatggtgcaatgcaacttcgtctccatcgccgacctgcaggcc
cgagaaaaggacaccattttggatgtgattggagtgtgcaagagcgtgtccgacgtgacc
cgcctcaacaccaagaacaaccgtgaggtctccaagaggacactcaacctgatggaccag
tctggtaaactggtggaggtcaccctgtggggagaggaggcagaaacctttgatggctct
gggcagcccatcctggccatcaaaggggccaagctgtcggactatgggggcagatctcta
tctgcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatacaagctg
cgtggctggtatgacaaggagggccactctatggctggccagtctctgacggaggcgagg
acaggtggaggagggaacaccaactggaagaccctggctgacatcaagactgagcacctt
ggacacggagacaaggcagactacttcagctgcatcgccaccatagtgtacatccgtaag
gagaactgtctgtaccaggcgtgccctagtcaggactgcaataagaaggtggtggaccag
cagaatggcatgttccgctgtgagaagtgtgacaaagagttccccaacttcaagtaccga
ctcatcctctctgccaacatagcagactacggggacaaccagtgggtgacctgctttcag
gagagtgctgaagccattttgggacagaacgctgcttacctagggcagctcaaggactcg
aatgaagctgccttcgaggagatctttcagcaggccaacttccacacgttcgttttccgt
aacagagtcaagctggagacctacaatgacgagtcccggatcaaggccacggtgatggag
gtgaaaactgtggaccacaaggagtacagcaagagactcatcatgaacatcaggaagatg
gcttccgcccaataa
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