Oncorhynchus keta (chum salmon): 118397508
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Entry
118397508 CDS
T09424
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04142
Lysosome
oke04144
Endocytosis
oke05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118397508
04142 Lysosome
118397508
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
118397508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118397508
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oke04147
]
118397508
Membrane trafficking [BR:
oke04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
118397508
Exosome [BR:
oke04147
]
Exosomal proteins
Proteins found in most exosomes
118397508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
118397508
NCBI-ProteinID:
XP_035648247
LinkDB
All DBs
Position
18:complement(24968957..24995428)
Genome browser
AA seq
1679 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENTFY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASVL
LESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
GQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAILTMMS
HPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFFM
KTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDLELAEELLAWFLEE
DKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDKLDASESLR
KQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPTGYGQPPQPGFGYGM
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctattcgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagcaccctgacgatggagtctgacaagttcatctgtata
agagagaaggtgggcgagcaggcacaggttgtcatcattgatatggccgaccccaacact
ccaatccgtaggcccatctctgcagatagcgccatcatgaatcctgctagcaaagttatt
gccctcaaagctgcaaaaaccctccagatcttcaatattgagatgaagagcaagatgaag
gctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacactgtagca
ctggtcacagacaacgccgtctaccattggagcatggagggagactcccagccagtcaaa
gtctttgacagacactccagcctagcaggctgtcaaatcatcaactaccgcactgacgcc
aaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtgggagcc
atgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgccggc
ttcgcccagttcaaaatggagggtaatacagaggaatccacactgttctgcttcgctgtc
cgagggcaagctggaggaaagttacacataattgaagtgggaaccccaccaacaggcaat
cagccgtttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgacttc
cctgtagccatgcagatcagctctaagcaagatgttgtctttcttatcaccaaatatggc
tacatccacctgtatgacctggagactggcacctgtatctacatgaaccggatcagcggg
gagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaacagg
aaaggacaggtgttgtcagtgtgtgtggaggaggagaacatcatcccctacatcaccaac
gtgctccagaacccagacctagccctgcgcatggctgtacgcaacaatctggctggggcc
gaggagctgttcgccagaaagttcaataccctgttcgctgcagggaactactctgaggct
gccaaggtggccgcaaacgctcccaagggtatcctgcgtaccccggacaccatccgtaag
ttccagagtgtgccggcccagccgggccagacctctccactgctgcagtactttggcatc
ctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtccta
cagcagggacgcaagcagctgctggagaaatggctcaaagaggacaagctggagtgttca
gaggagctgggggacctggtgaaatcagtggaccccactctggctctcagtgtctacctc
agggccaacgtgcccaacaaggtcattcagtgcttcgctgagaccggacagttccagaaa
attgtcctctatgccaaaaaggtgggctacactccagactggatgttcctgctcaggaat
gtgatgaggatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggatgag
gagcccctggccgacatcacacagatcgttgacgtgtttatggagtataacctgatccag
cagtgtacctctttcctcctggatgccctgaagaataacaggcctgctgaggggcctctg
cagacacgcctgctggagatgaacctggtccatgccccacaggtggctgatgccatcctg
ggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaaggct
ggcctgctgcagagggctctggagcattacaccgacctgtacgatatcaaacgggctgtg
gtgcacacacacctgctcaaccctgagtggctggtgaacttctttggctccctgtcagtg
gaggactctttggagtgtcttcgggccatgctgtcggccaacatccgtcagaacctgcag
atctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcactgag
ctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccatcgttaac
ttcagccaggacccagaggtccacttcaagtacatccaggcagcctgtaagacgggacag
atcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtcaag
aacttcctcaaggaagctaagctgactgatcagctccccctgatcattgtgtgtgaccgc
tttgactttgtccacgacctggtcctctacctgtaccgcaacaccctgcagaaatacatt
gagatctatgtgcagaaggtgaaccccagccgtctgccggtggtgattggagggctgctg
gatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacagttc
tccactgatgaactagtggctgaggtggagaagaggaacagactgaagctgcttctgcct
tggctggaggcccgtatccatgagggctgtgaggagccagctacccacaatgccctggcc
aagatctacattgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttctac
gacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtggcc
tacgagagaggacagtgtgaccaggagctcattaatgtgtgcaatgagaactctctgttc
aagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagcgtgctg
ctggagagtaacccgtttagaagacccctcatcgaccaggttgttcagacggccctgtct
gagacacaggacccagaggaggtgtccgtcacagtcaaggccttcatgactgcagacctc
cccaacgaactcattgagctgctggagaagatcgttctggataactctgtcttcagtgaa
cacagaaacctgcagaacttgctgatcctgacagccatcaaggcagaccgtacccgtgtg
atggagtacatcaaccgcctagacaactacgatgcccccgacatcgcgaacatcgccatc
agcaacgagctcttcgaggaggccttcgccatcttcaggaagtttgacgtcaacacctct
gccgtgcaggttctgattgagcacattgggaacctggaccgggcctacgaatttgctgag
cgctgcaacgagcctccagtgtggagtcagctggccaaggctcagctgcagaagggtctg
gtgaaggaggcaatcgactcctacatcaaggctgatgacccctctgcctacatggaggtg
ggccaggctgcagcccagagtggtaactgggaggacctggtgaagttccttcagatggcc
cgtaagaagtcccgtgagtcctacgtggagacagagctcatcttcgccctggccaagacc
aaccgcctggctgaattggaggagttcatcaatggacccaacaacgcccacatccaacag
gtgggtgacaggtgttatgatgagaggatgtatgatgcggccaagctgctctacaacaac
gtgtccaacttcgggcggctagcgtccaccttggtccacctgggagagtaccaggctgcc
gtggatggagcccgcaaagccaacagcacccgcacctggaaagaggtgtgctttgcctgt
gtggatggaaatgagttccgcctggcacagatgtgtggcctgcatattgttgtccatgct
gatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctgatc
accatgctggaggcagccctgggtctggagcgtgctcacatgggcatgttcaccgagctg
gccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttctgg
tccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcagag
ctggtcttcctctatgacaagtatgaggagtttgacaacgccatcctcaccatgatgagc
cacccctcagacgcctggaaggagggacagttcaaagacattgtcaccaaggtggccaat
gtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactgaac
gacctgctcatagtgctgtcaccacgactcgaccacacccgcgcagtcaacttcttcatg
aagaccaagcagctgtcactggtcaagccgtacctgcggtcagtgcagaaccacaacaac
aagggtgtcaacgaagcacttaacaacctcttcatcacagaggaagactatgcggccctg
cgtgcctccattgatgcctacgacaactttgacaacatcaccctggcccagggcctggag
aagcatgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaaccgc
tggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcagtat
gcatctgagtcgaaagacctggagctggctgaggagttgttggcctggttcctggaggag
gacaagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgaggcctgac
gtggtgctggagacggcctggcggcacaacatcatggacttctccatgccctacttcatc
caggtcatgagggagtacctctccaaggtcgacaagcttgacgcctcagagtccctgagg
aaacaggaggagcagaacacagagtcccagcccattgtttatggcacgccccagctcatg
ctcacttcaggccctggtcaggctgtgccaccccagcctggctatggaggctacggctac
ccagcagcacccaccggctacggccaacctccccagcctggctttggctatggcatgtga
DBGET
integrated database retrieval system
