KEGG   Oncorhynchus keta (chum salmon): 118397717
Entry
118397717         CDS       T09424                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03082  ATP-dependent chromatin remodeling
oke03083  Polycomb repressive complex
oke04110  Cell cycle
oke04330  Notch signaling pathway
oke04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    118397717
   03083 Polycomb repressive complex
    118397717
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    118397717
   04350 TGF-beta signaling pathway
    118397717
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    118397717
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oke03036]
    118397717
Enzymes [BR:oke01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     118397717
Chromosome and associated proteins [BR:oke03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     118397717
   HDAC complexes
    Sin3A-HDAC complex
     118397717
    BRAF-HDAC complex
     118397717
    REST complex
     118397717
    SHIP complex
     118397717
    MiDAC complex
     118397717
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     118397717
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    118397717
  Chromatin remodeling factors
   NuRD complex
    118397717
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 118397717
NCBI-ProteinID: XP_052325260
LinkDB
Position
19:complement(8723514..8740694)
AA seq 485 aa
MALSSAGGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ASGEEMTKYHSDDYIKFLRSIRPDNMSEHSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
AGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLPSVVCPVRYHQRVLYIDIDI
HHGDGVEEAFFTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESY
EAIFKPVMAKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVESMKSFNLPLLM
LGGGGYTIRRGFCWTARLWLWTASSSQPELPYNDYFEYFGPDFKLHISPSNMTNQNTNDY
LEKIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEEDESPDKRISIRAHDKRIACEE
EFSDSEDEGQGGGGRRNAANHKKTKRVKTEEEKEKEAEEKKDVKEEKETEEKMDTTGPTE
ETKTS
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcgctgtcgtctgcaggaggaacaaagaagaaagtttgctattattatgatggcgac
gtaggtaattattactatggccagggacatcccatgaaaccccacaggatccgtatgacc
cacaacctcctgctcaactatggactgtacaggaagatggagatatatagacctcacaag
gccagtggagaggagatgaccaagtaccacagtgacgactacatcaagttcttgcgttcc
atccggccagacaacatgtcagagcacagcaagcagatgcagagatttaatgtgggagag
gactgcccagtgtttgacggcctgtttgagttctgtcagctctcaacgggaggctctgtc
gcgggggcagtgaagctgaacaagcagcagacggacatcgccatcaactgggccggagga
ctccatcatgccaagaagtctgaggcctctgggttctgctacgtcaacgacatcgtcctc
ccctctgttgtctgtcctgtcaggtaccaccagagggtcttgtacatagacatcgacatt
caccatggagacggagtggaagaggctttcttcaccacagaccgggtcatgacggtgtcc
ttccacaagtatggagaatacttccctggtaccggagacctgagggacattggagcaggg
aaggggaagtactacgctgtaaactaccctctcagagacggcatcgacgatgagtcttac
gaagccatcttcaaacctgtgatggctaaagtgatggagatgttccagcccagtgcagtc
gtgttacagtgtggagccgactctctctcaggagacagactgggctgtttcaacctcacc
atcaaaggtcatgctaagtgtgttgagtccatgaagagtttcaacctgcctctgttgatg
ttgggaggtggaggttataccatccgtcgtggcttctgctggacagccaggctgtggctc
tggacagcatcttccagccagccagagctgccttacaacgattactttgaatactttggt
cctgacttcaagctccacatcagcccgtctaacatgaccaaccagaacaccaatgattac
ctggagaagatcaaacagaggctgtttgagaacctgcgcatgctgccccacgccccgggg
gttcagatgcaggccatcccagaagacgctccacaccccgactctggagatgaggaggac
gagagccctgacaaacgcatctccattcgggcccatgataagaggatagcctgtgaagag
gagttctccgactctgaggatgagggacagggaggagggggaaggaggaacgctgccaac
cacaagaagaccaaacgagtcaagactgaggaggagaaagagaaggaggcagaggagaag
aaagatgtgaaagaggagaaagagacagaggagaagatggacacaacagggccaacagaa
gaaacgaagacgtcctga

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