Oncorhynchus keta (chum salmon): 118398000
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Entry
118398000 CDS
T09424
Name
(RefSeq) terminal nucleotidyltransferase 4A isoform X1
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118398000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118398000
03016 Transfer RNA biogenesis [BR:
oke03016
]
118398000
Enzymes [BR:
oke01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
118398000
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118398000
Transfer RNA biogenesis [BR:
oke03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118398000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
Polbeta
TUTase
PAP_NTPase
DUF7752
Motif
Other DBs
NCBI-GeneID:
118398000
NCBI-ProteinID:
XP_035648816
LinkDB
All DBs
Position
19:complement(25420356..25434352)
Genome browser
AA seq
809 aa
AA seq
DB search
MDPRVAWIQPEQKGPANAFWMQVWETSQVRANSGQHLHNNQNYNLHLNSPALDVYKHVAA
KGNSMCTNTGLSSSSHHGISKGTTSNHGTAFSSFGVTLPNGPVQNSLTPSNAYGVTTDLG
DSKMPQKTGSLSSLSSVESITDSTSSNRSLGKISGGNVTGNMNKNAGGVNLLFNFSESMH
NNVNQYHHQRHHQHHPQYNFQQNCVKRHPTHPPASLNNHTHHPGRRKSDNKASTYGMNYL
LSNYGNYVSSETGTPWKTRKYSPGVDGLHEEVVDFYNFMSPRPEEAAMRKEVVDRIETVI
KELWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWECPPLQQLEQALRKHNVAEPFSIKVL
DKATVPIIKLTDQETEVKVDISFNVETGVKAAFFIKDYTRRYPVLPYMIFVLKQFLLQRD
LNEVFTGGISSYSLILMVISFLQLHPRIDASNPNINLGILLIEFFELYGRHFNYLKTGIR
VKNGGAYMAKEDMMKVMTNGYRPSMLCIEDPLMPGNDVGRSSYGAMQVQQVFDYAYIVLS
HAVSPLARSYPNKDIDSALGRIIKVTQEVIDYREWIMTKWGGRHLARMESQGSLLDQDPA
GCVLGVGVEEQRDSVSPHSADSPMSLSSPHQHSSASSVSSLSGSDNDSDSTPPALPLYPF
QALGMTLPLGLALGKAGINQHHLIMSPGSQACMSLPGALTMHSLPGRQVGIDGHHLPPFF
HMPPPTHHNPHAPSNPQPLSSPHPASHTHQNGPKCQMKGFHNPAVVHSPALANRAHTHPL
THAHTHSHTQYRNTWRRRKRDSLPVSLSR
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggatcctagggtggcttggattcagcccgagcagaaaggacctgcaaacgcattttgg
atgcaagtctgggagacttctcaggtacgagcaaactccggccagcatcttcataataat
cagaactacaacctgcatttgaattctccagcgttggacgtttataaacatgttgcggca
aagggcaatagcatgtgcaccaacactggtctgagcagcagcagccatcacggtatttca
aaaggcactacttctaaccacggcactgcgttctcctccttcggggtaacgttaccgaac
ggacccgtacagaactcattgaccccgtccaacgcttacggggtaacgacagatttagga
gacagtaaaatgccccaaaagacgggatctctatcgtccttgtcttcagtggaatccata
acggacagcacatcttcaaaccgctctttgggaaagattagtggtggcaatgtaactgga
aatatgaataaaaacgctggcggtgtcaatctgttatttaacttcagtgaaagtatgcat
aataatgtcaaccagtaccaccatcaaaggcaccatcagcatcaccctcagtacaatttc
caacagaattgtgtgaagcgtcacccgactcacccgcctgcatccctaaataaccacact
caccatccaggccgaaggaaaagtgacaacaaggcgagcacctatgggatgaattacctt
ctttctaactatggcaactatgttagttcggagactgggacgccttggaagacgaggaaa
tacagccccggcgttgatggtctccatgaggaggtggtggacttctacaacttcatgtct
ccccgaccggaggaggctgctatgaggaaggaggtggtcgacaggatcgagactgtcatc
aaggagctgtggcctactgccgacgtgcagatatttggcagcttcagcactggactctac
ctacctacaagtgacatagacctggtggtgtttgggaagtgggaatgtcccccgttgcag
cagttggaacaggccctccggaaacataacgtggcggaacctttctccatcaaagtgctg
gacaaagctacagtgccaatcatcaagctgactgaccaggagactgaagtcaaagtggac
atcagcttcaacgtggagactggagtcaaagctgctttctttatcaaggactacacccgg
aggtatcccgtgctgccttacatgatctttgtgctgaagcagtttctgctccagagagat
ctcaatgaggtgttcaccggaggaatcagctcttacagcctcatcctgatggtcatcagc
ttcctccagctccacccaaggattgacgccagcaaccccaacatcaaccttggcattctg
ctgattgagttctttgagctttatgggcgccattttaactacctgaagacaggcatccgc
gtcaagaatgggggggcctacatggccaaggaggacatgatgaaggttatgaccaatggc
tacaggccctccatgctctgtatagaggacccactgatgccaggtaacgacgttggcagg
agttcgtacggagccatgcaagtccagcaggtgtttgactacgcttacatcgtcctcagt
cacgccgtgtcaccactcgcacgctcctacccaaacaaggacattgacagcgctttgggt
aggataatcaaggtgacacaggaagtgattgactacagggagtggatcatgacgaagtgg
gggggcaggcacctcgcccgtatggagagccagggttccctcctggatcaggacccagca
gggtgtgtgttgggtgtaggtgtggaggagcagagggactctgtttcccctcacagtgca
gactctcccatgtccctttccagtcctcaccaacactcctcagcctcctctgtctcttca
ctgtctgggtcagacaatgactctgattcgacacccccggcgctgcccctctaccccttt
caggctttgggtatgactctacccctgggcctggcactgggcaaggctggcatcaaccag
caccacctcatcatgtcccctggctcacaggcgtgtatgtctttgcccggtgccctgacg
atgcactctttacctggcagacaggtgggtatagacgggcaccatctccccccctttttc
cacatgcccccccctacccatcataacccccatgccccctccaacccccagcctctgtcc
agcccccaccctgccagccacacacaccagaacggtcccaagtgtcagatgaaaggtttc
cacaatccagccgtggtccacagtcccgccctggccaaccgtgcacacacccaccctctc
acacacgcccacacacactctcacacacagtaccgcaacacctggcggcgtcgcaagagg
gacagcttaccagttagcctgagcagataa
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