Oncorhynchus keta (chum salmon): 118398046
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Entry
118398046 CDS
T09424
Symbol
arid1ab
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118398046 (arid1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118398046 (arid1ab)
03021 Transcription machinery [BR:
oke03021
]
118398046 (arid1ab)
03036 Chromosome and associated proteins [BR:
oke03036
]
118398046 (arid1ab)
Transcription factors [BR:
oke03000
]
Eukaryotic type
Helix-turn-helix
ARID
118398046 (arid1ab)
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118398046 (arid1ab)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118398046 (arid1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
118398046
NCBI-ProteinID:
XP_035648913
LinkDB
All DBs
Position
19:complement(29727173..29796578)
Genome browser
AA seq
2309 aa
AA seq
DB search
MAAQVASVATLNTSPPSELKKPDRDPLEESVPGEKQHVNKEPGSDNGSPGQKDLQDGADA
GNVGGGGEPDMKNGNGNSSRVNNNNNQNDTGGPEGNNHSGMGHHHQGSFPPPPYGYNQHY
SRGPFHQHGGQQSPGMAAAAGPAVQPGNMMDPYPPNSHEHGFPNHFNNYSPFPNRTSYQG
QGYAMNSPRNNQPPAAGGQPGKQQPAGGTTAMAASYNNQRYNIGNLQPTSTPTLNQLLTS
PSSTRTYQNYPQGDYSNQEGASKGAADMASSQYGGGHPGWQQRTHHPPPMSPGNTGPGNT
GPLNRNQPPSPMDQAGKMRGQGYGGVNPYSQQQGQGQGPPPGAQQGASYPGQGYGPPGSQ
RYPMGMQGRTPGGMGGMQYGQQMAGYGQQGPGGYGQQSQGYYGQHGPPPHAGQQQSPYPQ
QVHTSQGQPSAQHSQPGAPGPYPQGQGPPQVGPPQIQPPYNQGPQQQGQAVPQGQGPQPS
YPQQQGPQGQGQQPPQQQLPSQQQGPPQQQERVAPPQAQPPPGHQQPPGHQPPPSHGGQQ
PPTGHQPSPGPQGHHPSPGHGGPPQQQGQSQQGQPSPYSQTPPLQQSPFQRFPPPPQELS
QDSFSSQSSAPPSNQPMTSTKSGAEDSMQGRPSSLPDLSGSIDDLPTGTEGALSPGVSTS
GVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVTPSRSGPLSPAAVPGNQM
PARPPSAHSDSIHSSMNQSAMGQDRVYMRNPQMPPYGSPQQPGSALSPRQSSGGQMHPGM
GPYPQNNSMGNYGPQGGQYGPQGYPRQPGYSGMPNANYPGGPGGMNPMPGQAGGVPYAGM
PPGRMGPGQMGARPYGPGMGPNMGPGMPPQVTSGMCPPPGMNRKVPGGPPDAASAMHHGG
PGANSIHNRPPGYPPNMPQGMMGAGSPYGPGPGAINSMQGMLNQGGPYGGGPMGGNMANN
TPGIVPSPEFGIDVKLNPAQKMNNKVDGTPKPETKKVKKKSNSSTTTNEKITRLYELGPE
PERRTWVDRYLAFTEEKATGMTNLPAVGRKPLDLFRLYVSVKEIGGLTQVNKNKKWRELS
TNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDLFIDAKKTTQPKIQPPSPAGS
GSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPMPGVRLQDPFADGGDPAFARRNS
MTPNSYQPGMGGPEMMGRMGPYEPNKDPFGGMRKAGEQFMTPALGPNSGVEGQFNRGPPG
PMVPNMQMGQRQQYPYVPGYDRRQEPGMGPDGSMGPGAPQPNLMPSGADSGMYSPSRPPP
VQRHDSYGNQYPGQGAPPGGPYPNQQPGMFPQQQPNYKRSPGDGTYGPPAKRHEGDGMYN
VPFSGQQQPGPQPPGAPQGQQDMYNQYNTGYPGSDRRPPGPQGQFPFPFGRDRGPSSGGP
NSQSPMPPQMMGSPMQAAPDGPQCPMWQGRNEMGYPNYPNRPGPPGPGQGPPQGYHGMNR
SEEMMPGADQRINHEGQWPGHPNQRQPPYGPGGSGPPMSRPLQSNYQSSQNHISQVSSPA
PMPRPMESRTSPSKSPYMHSGIKMQKAGPPVPASHIGQAPVQPPLIRRDISFPPGSVEAS
QPILKPRGRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSISTFNLCQL
PGFLELVVEYFRRCLIEIFGILKEYEVGDPGQRMLIDPHTADEDCSDEELPEQEDMEEDE
EEEEDDEEEEEERKSNTDTTTSSQQVQVKQEGVGKEEKSTTEKLTAEEEREGGESSSSSS
PAPQDSSLSQEKPKQASKFDKLPIKMVRKKDPFPGCRSSKLGRRQSFDSGLIHWSIGGGD
TTEHIQTHFESRSDLLKQRKRVPPSVTESRKKVAVTVSEHPEKTKPGKEQTTSPAEKTTK
TSAPTTPAPVTATIDDVLSARPGSVTEEAVRGAAEEQKESGGQFLFSIRQAQQSRRNITI
LEDEPHSKDETPLSTLSDWQDALARRCICVSNIVRSLSFIPGNDLEMSKHPGLLLLLGRL
VLLHHRHPERKQAPVTYEKEEDEGVSCERDEWWWDCLEVLRENCLVTLANISGQLDLSIY
PESICLPLLDGLLHWAVCPSAEALDPFPMLGPHGALSPQRLVLETLSKLSIQDNNVDLIL
ATPPFSRLEKLYGTLVRLVGERKVAVCREMSVVLLANLAQGDSMAARAIAMQKASVGNLL
GFLEDSLAATQYQQSQSSLMHLQGAHFEPTSVDMMRRAARALHAMAKVEENHSEFTLYES
RLLDISVSPLMNSLVSHVICDVLFLIGQS
NT seq
6930 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgctagcgtcgccactctcaacactagcccgccatccgaacttaaa
aagccggatcgggacccactggaggagtcggtaccgggagagaaacaacatgtaaataag
gaaccgggatctgacaacggatctcctggacagaaggatctgcaggacggggccgatgct
ggaaatgtagggggaggaggtgagcctgacatgaagaacgggaacgggaattcgtccagg
gtgaataataataacaaccagaatgatactgggggaccggaggggaataaccactccggg
atgggccatcaccaccagggctcattccctccacctccttacggttacaaccagcactac
agccggggcccttttcatcaacatggcggacaacaaagccctggcatggcagctgcagcg
gggccggcagtgcagccaggtaacatgatggacccatacccgcccaactcacacgagcac
gggttccccaaccattttaacaactacagccccttcccgaaccggacttcttatcagggc
caaggatacgccatgaattccccgcgtaataaccagcccccggcggctggggggcagcca
ggcaagcaacagccagcaggcggaactacagctatggctgcctcgtacaataatcagagg
tataacataggaaacctacaacccacgtctaccccgactttaaatcagcttctaacgtct
cccagctcaacgaggacctaccagaattacccacaaggagactatagtaaccaggaaggg
gctagcaagggagcagcagatatggccagcagtcagtatggtgggggccatccgggttgg
caacaaaggacccaccacccgcctccaatgagcccagggaacacgggacctgggaacacg
ggacctctgaacagaaaccagccccccagccctatggaccaggcagggaagatgagaggc
caggggtatggtggagtcaacccctactctcagcagcaaggccaggggcagggccctcct
ccaggggctcaacagggtgcctcctacccaggccagggctacggacccccagggtctcag
agataccccatgggcatgcagggacgcacccccggcggcatgggtggcatgcaatacgga
caacagatggccggctatgggcagcagggtccagggggctacggtcagcagagccagggc
tactacggccagcatggccccccaccacacgctggtcagcagcagtccccctacccccag
caggtccacacctcccagggtcagccctcagcccaacacagccagcctggggcccccggc
ccctatccccagggtcaaggccctccgcaggtgggtccacctcagatccagccgccctac
aaccagggaccgcagcagcagggccaggccgtgcctcagggtcagggcccccagcccagc
taccctcagcagcaaggaccccaagggcaagggcagcagcctccacagcagcagctcccc
tcgcagcagcaaggacccccccagcagcaagaaagggtggcccctccacaggcccagcca
cccccgggccatcaacaacccccaggccaccagccaccccctagccatggtgggcagcag
ccacccacaggccatcagccctccccaggcccccagggccaccacccctctccaggtcac
ggtggacccccccagcagcagggtcagtctcagcagggccagccctcaccctactctcag
accccacccctgcagcagtcgcccttccagcggtttccacctccaccgcaggagctctcc
caggactcgttcagctcccagtccagtgctcccccctccaaccagcccatgacttccaca
aagagtggagcagaggacagcatgcagggacggccttctagcttaccggacctctctggt
tctatagatgacctgccgactggtacggagggggctctgagtccgggcgtcagcacgtcg
ggggtgtccagtagccagggggaacagagtaaccccgcccagtcacccttctcacctcac
acctcgccacacttgcctggcatccgcgggccctccccttcccccgtgggctcccctgcc
agcgtcaccccctcccgctctggacccctctcgcctgctgccgtgccaggtaaccagatg
cctgcccggccacccagcgcccattcagacagcatccactcatccatgaaccagtcagcc
atgggccaggacagggtgtacatgcgtaacccccagatgcctccgtacgggtcgccgcag
caacctggctccgccttatccccccgccagtcgtcgggaggccagatgcatcctgggatg
gggccctaccctcagaacaactccatggggaactacggccctcagggtggacagtacgga
ccacaaggctaccccagacagcctggctacagtggcatgcccaacgccaactatcctgga
ggtccaggaggcatgaaccctatgccaggccaggctggtggggtgccgtacgcaggcatg
ccccccggcaggatgggtccaggtcagatgggtgctcgcccctacggccctgggatgggc
cccaatatgggccctggcatgcccccacaggtgacctctgggatgtgtccccctccaggc
atgaacaggaaggtccccgggggccctccggatgcagcctccgccatgcaccacggtggc
cccggagctaactctatacataacaggcctccaggctacccccccaacatgccccagggg
atgatgggagcagggtctccgtacggcccggggccgggggccatcaacagcatgcagggc
atgttgaaccaaggaggaccctatggaggagggcccatgggagggaacatggccaacaac
acacctggcattgttcctagccctgagtttggcatcgatgtcaaactgaacccagcccag
aagatgaacaacaaggtggacggcacgcccaaacctgaaaccaagaaggtaaagaagaag
tcaaactcttcgacgacgaccaatgagaagataactcgtctgtatgagctgggtccggag
ccggagaggaggacttgggtagaccggtatctggcgttcactgaggagaaggccacgggc
atgaccaaccttcctgccgtgggacgcaaacctctggacctcttcagactttacgtctcg
gtcaaagagataggaggcctcacacaggtgaacaagaataagaagtggagggagttgtcc
accaacctgaacgtgggcacgtccagcagcgccgccagctctctgaagaagcagtacatc
cagtgtctgtacgccttcgagtgtaagatcgaacgtggcgaggacccgcccccggatctc
ttcatcgacgccaaaaagaccacccagcccaagatccagccccccagcccagctgggtct
ggatctctgcagggcccccagaccccccagtccaccagtagttccatggcggaggggggg
gacctgaagccccccaccccagcctccacccctcacagccagataccccccatgccagga
gtcaggctgcaggacccgtttgcagacgggggcgacccggcgtttgccagacggaactct
atgacccctaacagctaccagcctgggatgggtggtccggagatgatggggcgcatgggg
ccctatgaacccaacaaggacccctttggtggcatgaggaaagctggagagcaattcatg
actccagcgttgggccctaacagtggtgtggaggggcagttcaacagaggccccccaggg
cccatggtccccaacatgcagatgggtcagagacaacagtacccctatgtacctggatat
gacaggagacaggaaccagggatgggtcctgatggcagtatgggtcctggagccccccag
cccaacctgatgccttcaggggccgattcggggatgtactcccccagccgacccccaccg
gtgcaacggcatgattcctatggtaatcagtatcctggccaaggagcgccacctggtggc
ccctaccccaatcagcagccaggaatgtttccacagcaacaaccgaactataagcggtct
ccaggtgacgggacctacggtcccccagcgaagcgtcacgagggggatgggatgtacaat
gtccccttcagcggtcagcagcagccagggccccagccccctggggccccccagggccaa
caggacatgtacaatcagtacaacacaggttatcccggctccgaccgccgaccacctggc
ccccagggccagttccccttccccttcggccgagaccgggggccctctagcggtggccca
aactcccagtcccccatgcctccccaaatgatgggcagcccaatgcaggcggcccctgac
ggccctcagtgccccatgtggcagggacgcaacgagatgggctaccccaactaccccaac
cgcccggggcctccgggacctggccaggggcccccccaggggtaccacggcatgaaccgg
tctgaggagatgatgccaggggcagaccagcggattaaccacgagggccagtggccggga
caccccaaccagagacaacccccctatgggccggggggctcgggtccccccatgtccaga
cctctgcagtccaactatcagagctcccagaaccacatatcccaggtgtctagtcctgcc
cccatgccccgccccatggagagccggacgtccccctccaagtctccctacatgcactcc
ggcatcaagatgcagaaggcgggtccccccgtgcctgcttcccacataggccaggcccct
gtgcagccccctctcatcaggcgggacatatccttccccccagggtcggtggaggcctcc
caacccatcctcaaacccagaggaagactcaccatgaaagacatcggcaccccagaggcc
tggagagtgatgatgtcactgaagtcaggcttactagctgagagcacttgggccttggac
accattaatattctactgtatgatgacaacagcatttctactttcaacctctgccagctg
cctgggttcctggagctggtagtggagtatttcagacgctgcctcatcgagatctttggc
atcctgaaggagtatgaggtgggagaccctggccagaggatgctcatcgacccgcatact
gccgacgaagactgctctgatgaagagctacctgagcaggaggacatggaggaggacgag
gaagaagaagaggatgacgaagaggaggaggaggagaggaaaagcaacacagacaccacc
acctcgtcgcagcaggtccaggtgaaacaggagggggtggggaaagaggagaaatccaca
acggagaagttgacagcagaggaggaaagggaaggaggagagtcttcttcttcctcctcc
ccagcccctcaggactctagcctctcccaggagaaacccaaacaggccagtaagttcgac
aagctgcccatcaagatggtgcgtaagaaagaccccttccccggttgccgttccagtaaa
ctaggccggcggcagagctttgacagcggactgatccactggagtatcggcgggggggac
accacggaacacatccagacccacttcgagagccggtccgacctcctcaagcagcggaaa
cgggtgccgccgtcagtcaccgagagcaggaagaaggttgccgtgactgtgtcggaacac
cctgagaagaccaagcctggcaaggagcagaccacctcccctgcagagaagaccaccaag
acctccgccccaaccacacctgccccggtcaccgccaccattgacgacgtgctgtcggcc
cggccgggctcggtgacggaggaggcggtgcgaggagcagctgaggagcagaaagagagc
gggggacagttcctgttctccatccgccaggcacagcagagccgacgcaacatcaccatc
ctggaggacgagcctcacagcaaggacgagaccccactgagcacgctgtcggactggcag
gatgccctggctcgccgctgcatctgcgtctccaacattgttcgatcgctctccttcatc
cccggcaacgacctggagatgtccaaacacccagggctgctgctgctgctgggccgtctg
gtcctgctccaccaccgtcacccagagaggaaacaggcccccgtcacctacgagaaggag
gaggacgagggggtgagctgtgagagggacgaatggtggtgggactgtctggaggtcctc
agggagaactgcctggtcactctggcaaacatctctggccagctggacctgtccatctac
ccagagagcatctgtctgcccctgctggatggcctgctccactgggctgtttgtccctca
gccgaggccttggaccccttccccatgctggggccccacggggccctatccccccagaga
ctggtgctggagaccctcagcaagctgagcatccaggacaacaacgtggaccttatcctg
gccactcctccattcagccggctggagaagctgtacgggacgctggtgcgtctggtcggg
gagaggaaggtggctgtctgcagggagatgtctgtggtcttactggccaacctggcccag
ggagacagcatggcggccagggccatcgccatgcagaaggccagcgttggtaacctcctg
ggcttcctggaggacagtctggcagccacgcagtaccagcagagccagagttccctgatg
cacctacagggggctcactttgagcccaccagtgtggacatgatgcggcgagcggcccgt
gccctgcacgccatggctaaggtggaggagaaccactcagagttcaccctgtacgagtcc
cgcctactggacatctctgtctcaccactcatgaactctctggtgtcccatgtgatctgt
gacgtactctttctgattggccagtcatga
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integrated database retrieval system
