Oncorhynchus keta (chum salmon): 118398157
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Entry
118398157 CDS
T09424
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oke00535
]
118398157
Proteoglycans [BR:
oke00535
]
Extracellular matrix (ECM) proteoglycans
Others
118398157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_nematode
VWA_3
DUF4992
DUF4959
Motif
Other DBs
NCBI-GeneID:
118398157
NCBI-ProteinID:
XP_052326375
LinkDB
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Position
19:36244872..36345705
Genome browser
AA seq
1883 aa
AA seq
DB search
MQAIGLKMWVWSPLLCLVLISLLPVQAQGQVATPRRLRFKVLSATQLHVSWKEPKGEFES
YKFIYSTQSDAEETELEMTKKEAKVIIDFDPRKLYTVKVTAVKGAQESKPLQGTFKKPDN
ENVQPQNVRPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRINFRLVRM
FLENLVSAFHVEFDKTRIGLAQYSGDPRMEWHLNTFTTKEAVIDAVKNLPYKGGNTLTGL
ALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVRPPAQSLREAGIELFAIGVKNADE
KELKAIGSPPEETHVYNVADFSVMSSIVERLTRTVCDRVEQLDKAIKGDRGPEVTMTSPR
GLVTSEVTARSFRVSWTHAPGTVEKYRVVYYPASGGQPEEKVVQGTVDTVVLNYLLSLTE
YQVAVFAIYASSASEALRGSATTLALPTVNNLELFDITHNTMRARWRVAEGASGFMILYA
PLTEGDDADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQETTLPLIP
ARNLRFSNVDHSSARLTWEATSKKASGYRIMYVKTNGVQTNEMDVGRITTLLLRNLTSLT
EYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLRSSEVSTESFRVTWEHSAQDVVLYRLT
WTPIRGGDTKEMPVNGKMNSHLLTGLRPITEYEVSLIAVFRNEEESNAVTLTESTVARTT
TTTKATTTTTTTQATTTAVVRLGVRNLLLSDHTTFSMEVSWELQDRNVRQYRVAYVTARG
DRAEETKMVPGGQNSLLLQPLLSDMEYKVTVTPVYADGDGPGVSRMGRTLPLSAPRNLRV
SEEWYNRFRITWDTPPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMSGTEYGV
RVIASYTTGSSETLTGKARTLYLGVTNLNTYQVRMTSVCAQWGAHRHATLYRVVIESLLN
GYKQEARLGGGTTRHCFNDLTANTQYKISVYAQLQDTEGPAVSTTEKTFPVPTPAPTRPP
TTTAPPSIPSVKEVCKAAKADLAFLVDGSWSIGDDNFLKIIRFLYSTTGALDIIGPDGTQ
VAIVQFSDDARTEFKLNSYDNKERLLEAINHISYKGGNTKTGLAIRHVKDTIFTVGGGIR
RGIPKVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSERHVFF
VDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGLYGHVSGVSM
EPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFALWEILNK
DNEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFEGPEIEKLFYGSFHKLHMAISKTSATA
VIDCKLVGEKAINAAGNITTDGLEVLGRLVRSRGKKDSSAPFQLQSFDIVCSTSWASRDK
CCELPGLRKEEDCPAMPRACTCSQESKGPPGPTGPPGGPGIRGGRGDRGEPGAVGPIGPI
GDAGSPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGSSGRVGQTG
TRGLPGKDGPQGRTGPPGTIGTPGAPGSPGSSGPPGSLGNQGPPGPAGNKGEKGERGDLQ
SQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTVPGPPGEPGRQGGPGPQGEQ
GPPGRPGFPGSNGENGQAGARGLSGEKGDKGSPGAGVQGPRGPVGPPGPTGQGRTGSQGP
SGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGIGGDTSDRHNLPLVQLPP
NTYQNYDEVEEEDPYRYGEGGYPSEYYQPNYPAPRPVVPEDPGLTQGDEVLRTPGIHRSY
RNLADKNDKKEEEGPGERKMVVP
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctataggactgaagatgtgggtatggagtcctctactctgtctggttcttatc
tctctcttacctgtgcaagctcagggtcaagttgccaccccacgaagacttcgtttcaaa
gtcctgagcgcaacccagctgcatgtgtcatggaaagaaccgaaaggagaatttgaaagc
tacaaatttatttatagcacacagtcagatgcagaggagactgaactagagatgacaaaa
aaggaagccaaagtgatcatagactttgaccccagaaagttgtacacagtcaaggtcact
gctgtgaaaggtgctcaggagagcaagccacttcaaggaacatttaagaagcctgacaat
gagaacgtacagccccagaatgtacgacccaaaaaccagaaagacaccagtgtcactgag
gagaacaatgagatatctgaagagcagttcatgtgtaagaccccggccattgcagatatt
gtgatcctggtggacggatcatggagtatcggacggataaacttccgtctggtccgcatg
ttcctggagaatctggttagcgccttccatgtggagtttgacaagacacggataggtctg
gcccagtacagtggtgaccccaggatggagtggcacctgaacactttcaccaccaaagaa
gcagtcatcgacgctgtgaagaacctgccttacaaaggagggaacacattgacgggtctt
gcattgacgtacatcctggagaacagttataaacctgagtccggatccagggccggcgtt
cccaaaattggaatcctgatcacagatgggaagtctcaagacgatgtcagacccccggct
cagagtctgagagaggcgggaatagagctgtttgccattggtgtgaagaacgccgatgag
aaagagctgaaggccatcggctcacctccagaggagacgcatgtctacaacgtggccgac
ttcagcgtcatgagctctatcgtggagcgtctgaccaggaccgtctgtgaccgggtcgaa
cagctcgacaaggccatcaaaggcgacagaggcccagaagtcaccatgacctctcccaga
ggcctggtgacctcagaggtgacagccaggagtttccgggtgtcgtggacccacgcccca
gggacggtggagaagtaccgggtggtgtactaccctgccagcgggggccagcccgaggag
aaggtagtgcagggcacagtggacacagtggtgctcaactacctcctctccctgactgag
taccaggtggccgtgttcgccatctacgccagctcagctagcgaggccctccgaggcagc
gctaccacattggccctgcccacggtgaacaacctggagctgtttgacatcacccacaac
accatgagggcccgctggagggtcgcagagggggcttctggcttcatgatcctctatgcc
ccgctgaccgagggagacgacgccgatgagaaggaggtgaaagtggctgagacggtgaac
gaagtggaactggagaacctgaccccagacacagagtacacagtgacggtgtacgccatg
tacggagaggaggccagtgaccctatgaccagtcaggagaccacgctacccctgatccct
gcgcggaacctgcgcttctccaacgtcgaccacagctctgccagactcacctgggaggcg
acgtccaagaaggccagcggttaccgcatcatgtacgtcaagaccaatggagtgcagacc
aatgagatggacgttggccgtatcaccaccctgttactaaggaacctgacgtcattgacc
gagtacacggtggccatctttgctatctatgatgagggccaggcagagcccttgactgac
agcttcactactaagacggtcccagagcctctgaacctgaggagcagtgaagtctccaca
gaaagcttcagggtcacctgggaacactcagcccaagatgtggttctttacagactcaca
tggacccccatcagaggaggagacactaaagagatgccagtgaacggtaaaatgaatagc
cacctgctgactggactgaggcccattactgagtacgaggtctctctgattgctgtcttc
agaaacgaggaagaaagcaacgctgtgaccctcacagagtcaacagtggcaagaacaacg
actaccacaaaagctactactaccacaactaccacacaagctaccaccacagcagttgtg
cgtctgggtgtgaggaacctcctgctcagcgatcacaccaccttcagcatggaggtgtcc
tgggagctgcaggaccgcaacgtgcgtcagtaccgcgtcgcctatgtcaccgccaggggc
gatcgtgccgaggagacgaaaatggtcccaggtggtcagaacagcctcctgctgcagcca
ctgctgtctgacatggagtacaaggtgacggtcaccccggtctacgccgacggagacggc
cccggtgttagccgcatgggacgcaccttgccactgtctgctcctaggaacctgagagtg
tcggaggaatggtacaaccgcttccgtatcacctgggacacacccccatccccaactatg
ggctacagagtcgtctacaaacccatctctgctccgggacctgctttggagacctttgtg
ggcgaggacgtgaacaccatgctgatcctgaacctgatgagtggtactgagtacggcgtc
agggtcatcgcctcctacactaccggctccagcgagaccctcaccggcaaggccaggaca
ttgtaccttggagtgaccaatctgaacacctaccaggtgaggatgaccagcgtgtgtgcc
cagtggggtgcccaccgccacgccactctgtaccgtgtggtcatcgagtcgctgctcaat
ggatataagcaggaggcgagactgggaggaggaaccacccggcactgcttcaatgacctg
acagctaacactcagtacaagatcagtgtgtacgcccaactccaggatacagagggacct
gcagtctccaccacagagaagaccttccctgttcccaccccggcacccaccagaccaccc
accacgaccgctcctcccagtataccctcagtcaaggaagtttgcaaggcggccaaggca
gacctggcatttctagtggacggctcctggagcattggggatgacaacttcctgaaaatc
atccgcttcctgtacagcaccacaggagccctcgacatcattggaccagatggtactcag
gtggcaattgtccagttcagtgacgatgccagaaccgagttcaaacttaactcgtacgac
aataaggagaggctgctagaggccattaaccacatctcctataagggagggaacaccaag
acagggctagccatccgacatgtgaaagacaccatcttcacagtgggaggaggtatccgg
aggggcatccccaaggtactggtggtgttgactgacgggcgctctcaggatgatgtcaac
aaggtctccaaagagatgcagatggaagggtacattgtttttgccattggttttgcggat
gcggactacggggagctggtgagcatcgccagcaagcctagcgagagacacgttttcttt
gtggatgatttagacgccttcaagaaaattgaggaaaagctggtcacttttgtttgtgag
gctgccactgccacttgtccttcggtggcgatgagtggcagtaccttgccaggtttcagg
atgatggagatgtttggtctagtggagggtctgtatggacatgtatcaggagtgtccatg
gagcctggcaccttcaacagcttcccctgcttccgcctgcacaacaactccctccttgcc
cagcccaccaagtttatccaccccgagggtttgccctctgattacaccatcactatgctg
ttccgcctgctgcctgaaacgcccaaggagccctttgcattgtgggagatcctcaacaag
gacaacgagcccctggtgggcgtcatcctggacaacggtggcaagaccctcaccttcttc
aaccatgactacaaaggacagtttcagactgtgaccttcgagggacctgagatcgagaag
ctcttctacggcagtttccacaagctgcacatggctattagcaagaccagcgccacggct
gtcattgactgtaagctagtaggggagaaggccatcaacgcggcgggcaacatcaccacg
gatggcctggaggtgctgggacgattggtgcgctccagggggaagaaggacagctctgca
ccgttccaactgcagtcgtttgacatcgtctgcagcacgtcctgggccagccgagacaag
tgctgtgagcttcctggtttgaggaaggaggaggactgtcctgccatgccgagggcctgc
acctgcagccaggaaagcaaaggtccccctggccccactggaccccctggaggacctggg
atcagaggagggagaggggaccgtggagaaccaggagctgtgggaccgataggtccaatt
ggggacgctggttctcctgggctgcaggggcctcctggaccccaggggcccagcggacgt
accatcatgggccctccgggtggtcccggagaaagaggtgagaagggtgcagctggcgct
ccaggaatacagggcattcctggatctcctgggtcatcaggtcgagtgggacaaacagga
acaaggggacttcctggtaaagatggaccccaggggcgaacaggacctccagggactata
ggcactccaggagctcctgggtcaccagggtcaagtggacctccagggtcgctgggaaac
cagggacctcctggtcccgccggaaacaaaggagagaagggagaaagaggtgacctgcaa
tcccaggcatcggtccaagcaatcgcccggcaggtctgtgagcaactgatacagagtcac
atggctcgctacagctccatccttaaccacatccccagcgcacccgtctccgtccgcacc
gttccaggtcccccaggagagcctgggcggcagggcggcccaggaccacagggagagcag
gggcccccgggcagaccagggttccccgggtccaacggagaaaatggacaagcaggagcc
agaggtttgtcaggagagaagggtgacaagggaagcccaggcgcaggagtccagggtccc
agaggccctgtcgggcccccaggaccaacgggtcagggccggacaggtagccagggtcca
tctggtcggccggggaaccctggaacccctgggaggccgggtatccctggaccagtgggg
tcggctggacctcctggatactgtgaccagaactcctgtgtgggctacaacgtaggagag
ggtggcatcggtggtgacacatctgaccgccacaatcttcccttagtccaattgcccccc
aacacctaccagaactatgacgaggtggaggaggaggacccctataggtatggcgagggg
ggctacccctccgagtactatcagcccaactacccggcgcctcgaccggtcgtgcccgag
gacccaggcctcacccagggagacgaggtgctgaggacccccgggatccaccgctcctac
aggaacctggctgacaagaatgataagaaagaagaagaggggccgggggagaggaagatg
gttgtcccatga
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